Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g0988 | ATGACAGGAGGACATATAAACCCAGCAGTGACATTTGGGCTGTTTTTGGGTCGGAAGGTTTCATTGGTTAGAGCTGCACTATACATAATGGCTCAGTGTTTGGGAGCCATTTGTGGGTGTGGGTTGGTGAAGTCATTAAAGAAGGCTAACTTCAATGCCTTCAGCGGTGGAGCCACCGAGCTCGCCGACGGCTTCAGCCCCGGTGCTGGCCTCGCCGCTGAGATCATCGGAACCTTCGTTCTTGTATACACTGTCTTCTCTGCCACCGATCCCAAAAGAAAAGCTAGAGATTCCCATGTACCTGTTCTAGCGCCGCTCCCAATTGGGTTCGCCGTGTTCGTGGTGAATTTAGCCACGATTCCGGTCACCGGCGCCGGCATTAACCCAGCTCGAAGCTTCGGCTCTGCAGTGATGTTCAACAACCACAAAGCTTGGGATAACCATTGGATATTTTGGGTTGGACCTTTCATTGGAGCTGCAATGGCTGCAATTTACCATGAATTTGTTTTGAGAGGAGGAGCAGCTAAGACCTTGAAATCCTTCAGAACTTCCTCAATTTAA | 561 | 49.73 | MTGGHINPAVTFGLFLGRKVSLVRAALYIMAQCLGAICGCGLVKSLKKANFNAFSGGATELADGFSPGAGLAAEIIGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFVVNLATIPVTGAGINPARSFGSAVMFNNHKAWDNHWIFWVGPFIGAAMAAIYHEFVLRGGAAKTLKSFRTSSI | 186 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 28472818 | 28474286 | - | CrPI670011_04g009880.1 | Cre04g0988 | 495292 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g0988 | 186 | PRINTS | Major intrinsic protein family signature | 73 | 91 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre04g0988 | 186 | PRINTS | Major intrinsic protein family signature | 24 | 43 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre04g0988 | 186 | PRINTS | Major intrinsic protein family signature | 149 | 169 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre04g0988 | 186 | PRINTS | Major intrinsic protein family signature | 109 | 131 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre04g0988 | 186 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 2 | 182 | IPR034294 | GO:0005886(PANTHER)|GO:0015250(PANTHER) | |
Cre04g0988 | 186 | CDD | MIP | 2 | 169 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre04g0988 | 186 | Gene3D | Glycerol uptake facilitator protein. | 1 | 186 | IPR023271 | - | |
Cre04g0988 | 186 | Pfam | Major intrinsic protein | 2 | 166 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre04g0988 | 186 | ProSitePatterns | MIP family signature. | 5 | 13 | IPR022357 | - | |
Cre04g0988 | 186 | SUPERFAMILY | Aquaporin-like | 2 | 171 | IPR023271 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g0988 | Cre-Chr4:28472818 | Cre04g0992 | Cre-Chr4:28495913 | 6.30E-83 | dispersed | |
Cre04g0988 | Cre-Chr4:28472818 | Cre04g0991 | Cre-Chr4:28486743 | 9.20E-82 | proximal | |
Cre10g2147 | Cre-Chr10:36030815 | Cre04g0988 | Cre-Chr4:28472818 | 1.40E-76 | wgd | |
Cre04g0988 | Cre-Chr4:28472818 | Cre08g0699 | Cre-Chr8:19992402 | 6.60E-80 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g0988 | K09872 | - | csv:101215842 | 367.466 |