Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0988 ATGACAGGAGGACATATAAACCCAGCAGTGACATTTGGGCTGTTTTTGGGTCGGAAGGTTTCATTGGTTAGAGCTGCACTATACATAATGGCTCAGTGTTTGGGAGCCATTTGTGGGTGTGGGTTGGTGAAGTCATTAAAGAAGGCTAACTTCAATGCCTTCAGCGGTGGAGCCACCGAGCTCGCCGACGGCTTCAGCCCCGGTGCTGGCCTCGCCGCTGAGATCATCGGAACCTTCGTTCTTGTATACACTGTCTTCTCTGCCACCGATCCCAAAAGAAAAGCTAGAGATTCCCATGTACCTGTTCTAGCGCCGCTCCCAATTGGGTTCGCCGTGTTCGTGGTGAATTTAGCCACGATTCCGGTCACCGGCGCCGGCATTAACCCAGCTCGAAGCTTCGGCTCTGCAGTGATGTTCAACAACCACAAAGCTTGGGATAACCATTGGATATTTTGGGTTGGACCTTTCATTGGAGCTGCAATGGCTGCAATTTACCATGAATTTGTTTTGAGAGGAGGAGCAGCTAAGACCTTGAAATCCTTCAGAACTTCCTCAATTTAA 561 49.73 MTGGHINPAVTFGLFLGRKVSLVRAALYIMAQCLGAICGCGLVKSLKKANFNAFSGGATELADGFSPGAGLAAEIIGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFVVNLATIPVTGAGINPARSFGSAVMFNNHKAWDNHWIFWVGPFIGAAMAAIYHEFVLRGGAAKTLKSFRTSSI 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28472818 28474286 - CrPI670011_04g009880.1 Cre04g0988 495292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0988 186 PRINTS Major intrinsic protein family signature 73 91 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0988 186 PRINTS Major intrinsic protein family signature 24 43 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0988 186 PRINTS Major intrinsic protein family signature 149 169 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0988 186 PRINTS Major intrinsic protein family signature 109 131 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0988 186 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 2 182 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cre04g0988 186 CDD MIP 2 169 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0988 186 Gene3D Glycerol uptake facilitator protein. 1 186 IPR023271 -
Cre04g0988 186 Pfam Major intrinsic protein 2 166 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0988 186 ProSitePatterns MIP family signature. 5 13 IPR022357 -
Cre04g0988 186 SUPERFAMILY Aquaporin-like 2 171 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0988 Cre-Chr4:28472818 Cre04g0992 Cre-Chr4:28495913 6.30E-83 dispersed
Cre04g0988 Cre-Chr4:28472818 Cre04g0991 Cre-Chr4:28486743 9.20E-82 proximal
Cre10g2147 Cre-Chr10:36030815 Cre04g0988 Cre-Chr4:28472818 1.40E-76 wgd
Cre04g0988 Cre-Chr4:28472818 Cre08g0699 Cre-Chr8:19992402 6.60E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0988 K09872 - csv:101215842 367.466