Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0991 ATGGCCAAGGACTCTGATGCCGGAGGCTTCGCCGCCAAGGACTACCACGACCCTCCACCCGCTCCTTTCATCGACGCCAACGAGTTCACTCAGTGGTCGTTTTACAGAGCCATCATCGCTGAGTTCATCGCTACTCTCCTCTTCTTGTACGTCACTGTTCTTACCGTCATTGGCTACAGTAGCCAGTCCGACATCAAAAACGGCGGCCAAATCTGCGGCGGTGTTGGCATTCTCGGCATCGCCTGGGCTTTCGGTGGAATGATCTTCGTTCTCGTCTACTGTACCGCTGGAATTTCCGGTGGGCATATCAATCCGGCGGTGACATTTGGGCTGTTTTTGGCTCGGAAAGTGTCGTTGGTGAGAGCTGTTTTGTACATGGTTGCTCAATGTCTTGGTGCCATTTGTGGATGTGCTTTGGTCAAATCGTTTCAAAAGGGTCTTTACAATCGCTACGGTGGTGGAGCCAATTCTCTCGCCGACGGCTACAGTACTGGCACTGGCTTAGGCGCTGAGATTATCGGAACTTTCGTTCTTGTTTACACTGTCTTCTCTGCTACAGATCCCAAGAGAAGTGCTAGAGATTCTCACATTCCTGTTCTAGCTCCACTGCCAATTGGGTTTGCTGTGTTTATGGTTCATCTAGCCACCATTCCGGTTACCGGCACCGGTATTAACCCCGCTCGAAGCTTCGGTGCTGCAGTTGTCTTCAACCAGAGCAAGCCATGGAATGACCATTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCAATTGCTGCATTTTATCACCAGTTCATTTTGAGAGCTGGAGCTGTTAAAGCTTTGGGATCATTCAGGAGTACACACAGTGTTTGA 855 50.29 MAKDSDAGGFAAKDYHDPPPAPFIDANEFTQWSFYRAIIAEFIATLLFLYVTVLTVIGYSSQSDIKNGGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMVAQCLGAICGCALVKSFQKGLYNRYGGGANSLADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVVFNQSKPWNDHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSTHSV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28486743 28487876 - CrPI670011_04g009910.1 Cre04g0991 495295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0991 284 CDD MIP 36 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0991 284 NCBIfam MIP family channel protein 40 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0991 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Cre04g0991 284 Pfam Major intrinsic protein 28 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0991 284 SUPERFAMILY Aquaporin-like 28 268 IPR023271 -
Cre04g0991 284 FunFam Probable aquaporin PIP1-2 21 282 - -
Cre04g0991 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
Cre04g0991 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0991 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0991 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0991 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0991 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0991 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0991 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 280 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0991 Cre-Chr4:28486743 Cre05g2278 Cre-Chr5:34358408 6.00E-133 dispersed
Cre04g0988 Cre-Chr4:28472818 Cre04g0991 Cre-Chr4:28486743 9.20E-82 proximal
Cre04g0989 Cre-Chr4:28475261 Cre04g0991 Cre-Chr4:28486743 1.70E-30 proximal
Cre04g0991 Cre-Chr4:28486743 Cre04g0992 Cre-Chr4:28495913 1.70E-143 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0991 K09872 - csv:101214884 549.666