Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g0992 | ATGTCGAAGGATATTGAAGCTGGAGGGCGTGGTGGGTTTAGTGGGAAGGATTACGAAGATCCGCCGCCGGCCCCATTGATCGACGCTCAGGAGTTTGCCCAGTGGTCATTTTATAGAGCCATTATAGCAGAGTTTGTTGCTACTCTTTTGTTCTTGTATGTTACTGTTCTTACTGTCATTGGGTATAAAGTTCAGAGTGATGATAAGAATGGAGGCGAGATTTGTGGTGGCGTCGGTATTTTGGGCATTGCTTGGGCCTTTGGTGGCATGATTTTTGTTCTTGTTTACTGCACCGCCGGGATTTCTGGAGGACATATTAATCCAGCGGTGACTTTTGGGTTGTTCTTGGCTCGGAAAGTGTCTTTAATTCGAGCAATTCTTTACATGGTGGCTCAATGTTTAGGCGCCATTTGTGGGTGTGCATTGGTGAAATCATTCCAGAAGGCTCATTACAATGAGTACGGCGGTGGAGCCAATTCTCTCGCCGATGGGTACAGCACGGGCACCGGCTTAGCCGCGGAGATCATCGGAACTTTCGTTCTTGTTTACACCGTCTTCTCCGCCACCGACCCGAAGAGAAACGCTAGAGATTCTCACGTTCCAGTTTTGGCTCCACTCCCAATTGGATTCGCAGTGTTTATGGTTCATTTGGCTACCATTCCGATCACCGGCACCGGCATCAACCCAGCTCGAAGCTTTGGAGCTGCCGTGATCTTTAACAAAGACAAGCCCTGGGATGATCAGTGGATCTTTTGGGTTGGGCCGTTCATTGGAGCTGCCATTGCTGCAATTTATCATCAAATCGTGTTGAGGGCAGGGGCAGTTAAAGCTCTGGGATCGTTCAGAAGTTCCACTGCCGTATGA | 864 | 48.96 | MSKDIEAGGRGGFSGKDYEDPPPAPLIDAQEFAQWSFYRAIIAEFVATLLFLYVTVLTVIGYKVQSDDKNGGEICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAILYMVAQCLGAICGCALVKSFQKAHYNEYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKDKPWDDQWIFWVGPFIGAAIAAIYHQIVLRAGAVKALGSFRSSTAV | 287 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 28495913 | 28502492 | + | CrPI670011_04g009920.1 | Cre04g0992 | 495296 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g0992 | 287 | Gene3D | Glycerol uptake facilitator protein. | 24 | 287 | IPR023271 | - | |
Cre04g0992 | 287 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cre04g0992 | 287 | SUPERFAMILY | Aquaporin-like | 31 | 271 | IPR023271 | - | |
Cre04g0992 | 287 | FunFam | Probable aquaporin PIP1-2 | 24 | 285 | - | - | |
Cre04g0992 | 287 | PRINTS | Major intrinsic protein family signature | 87 | 111 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre04g0992 | 287 | PRINTS | Major intrinsic protein family signature | 209 | 231 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre04g0992 | 287 | PRINTS | Major intrinsic protein family signature | 249 | 269 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre04g0992 | 287 | PRINTS | Major intrinsic protein family signature | 39 | 58 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre04g0992 | 287 | PRINTS | Major intrinsic protein family signature | 173 | 191 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre04g0992 | 287 | PRINTS | Major intrinsic protein family signature | 124 | 143 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre04g0992 | 287 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 3 | 283 | IPR034294 | GO:0005886(PANTHER)|GO:0015250(PANTHER) | |
Cre04g0992 | 287 | CDD | MIP | 39 | 269 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre04g0992 | 287 | Pfam | Major intrinsic protein | 32 | 266 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre04g0992 | 287 | NCBIfam | MIP family channel protein | 43 | 265 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre04g0992 | 287 | ProSitePatterns | MIP family signature. | 105 | 113 | IPR022357 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g2421 | Cre-Chr2:37558276 | Cre04g0992 | Cre-Chr4:28495913 | 6.40E-135 | dispersed | |
Cre04g0697 | Cre-Chr4:24930536 | Cre04g0992 | Cre-Chr4:28495913 | 4.50E-12 | dispersed | |
Cre04g0988 | Cre-Chr4:28472818 | Cre04g0992 | Cre-Chr4:28495913 | 6.30E-83 | dispersed | |
Cre04g0989 | Cre-Chr4:28475261 | Cre04g0992 | Cre-Chr4:28495913 | 5.70E-31 | dispersed | |
Cre04g0992 | Cre-Chr4:28495913 | Cre05g2278 | Cre-Chr5:34358408 | 4.60E-133 | dispersed | |
Cre04g0991 | Cre-Chr4:28486743 | Cre04g0992 | Cre-Chr4:28495913 | 1.70E-143 | tandem | |
Cre04g0992 | Cre-Chr4:28495913 | Cre04g0993 | Cre-Chr4:28506674 | 1.30E-122 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g0992 | K09872 | - | csv:101215366 | 526.168 |