Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0992 ATGTCGAAGGATATTGAAGCTGGAGGGCGTGGTGGGTTTAGTGGGAAGGATTACGAAGATCCGCCGCCGGCCCCATTGATCGACGCTCAGGAGTTTGCCCAGTGGTCATTTTATAGAGCCATTATAGCAGAGTTTGTTGCTACTCTTTTGTTCTTGTATGTTACTGTTCTTACTGTCATTGGGTATAAAGTTCAGAGTGATGATAAGAATGGAGGCGAGATTTGTGGTGGCGTCGGTATTTTGGGCATTGCTTGGGCCTTTGGTGGCATGATTTTTGTTCTTGTTTACTGCACCGCCGGGATTTCTGGAGGACATATTAATCCAGCGGTGACTTTTGGGTTGTTCTTGGCTCGGAAAGTGTCTTTAATTCGAGCAATTCTTTACATGGTGGCTCAATGTTTAGGCGCCATTTGTGGGTGTGCATTGGTGAAATCATTCCAGAAGGCTCATTACAATGAGTACGGCGGTGGAGCCAATTCTCTCGCCGATGGGTACAGCACGGGCACCGGCTTAGCCGCGGAGATCATCGGAACTTTCGTTCTTGTTTACACCGTCTTCTCCGCCACCGACCCGAAGAGAAACGCTAGAGATTCTCACGTTCCAGTTTTGGCTCCACTCCCAATTGGATTCGCAGTGTTTATGGTTCATTTGGCTACCATTCCGATCACCGGCACCGGCATCAACCCAGCTCGAAGCTTTGGAGCTGCCGTGATCTTTAACAAAGACAAGCCCTGGGATGATCAGTGGATCTTTTGGGTTGGGCCGTTCATTGGAGCTGCCATTGCTGCAATTTATCATCAAATCGTGTTGAGGGCAGGGGCAGTTAAAGCTCTGGGATCGTTCAGAAGTTCCACTGCCGTATGA 864 48.96 MSKDIEAGGRGGFSGKDYEDPPPAPLIDAQEFAQWSFYRAIIAEFVATLLFLYVTVLTVIGYKVQSDDKNGGEICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAILYMVAQCLGAICGCALVKSFQKAHYNEYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKDKPWDDQWIFWVGPFIGAAIAAIYHQIVLRAGAVKALGSFRSSTAV 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28495913 28502492 + CrPI670011_04g009920.1 Cre04g0992 495296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0992 287 Gene3D Glycerol uptake facilitator protein. 24 287 IPR023271 -
Cre04g0992 287 MobiDBLite consensus disorder prediction 1 21 - -
Cre04g0992 287 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Cre04g0992 287 FunFam Probable aquaporin PIP1-2 24 285 - -
Cre04g0992 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0992 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0992 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0992 287 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0992 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0992 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0992 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 3 283 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cre04g0992 287 CDD MIP 39 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0992 287 Pfam Major intrinsic protein 32 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0992 287 NCBIfam MIP family channel protein 43 265 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0992 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2421 Cre-Chr2:37558276 Cre04g0992 Cre-Chr4:28495913 6.40E-135 dispersed
Cre04g0697 Cre-Chr4:24930536 Cre04g0992 Cre-Chr4:28495913 4.50E-12 dispersed
Cre04g0988 Cre-Chr4:28472818 Cre04g0992 Cre-Chr4:28495913 6.30E-83 dispersed
Cre04g0989 Cre-Chr4:28475261 Cre04g0992 Cre-Chr4:28495913 5.70E-31 dispersed
Cre04g0992 Cre-Chr4:28495913 Cre05g2278 Cre-Chr5:34358408 4.60E-133 dispersed
Cre04g0991 Cre-Chr4:28486743 Cre04g0992 Cre-Chr4:28495913 1.70E-143 tandem
Cre04g0992 Cre-Chr4:28495913 Cre04g0993 Cre-Chr4:28506674 1.30E-122 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0992 K09872 - csv:101215366 526.168