Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0995 ATGCCTACTTCCAGTAGATGGAGATCAGTGACCACCACAGTAAGATTCCAAGACGAAGAACTCGAAAATGGCGAAGCAGGGAGGAGGAGAAAGAGAGGAAGAAGGAAATGTGAGGGAATGTTTTGTGATTCAGATCAAGATTATGATGTGGTGAAGGGAATGGTACTAGATCCAAATCTGCCCATATTGAACAAATGGAATAGGGTTTTTCTGGTGGCTTGTTTGGTGTCACTATTTGTGGACCCTGTGTTCTTCTTCTTGCCGGTGGTGAACGTGGAGGAGGGGTGCGTGGAAATGAGCGGAGCGTTGGGGGTGGCGTTGACGGTGGTCCGGTCCATGGCGGATGTGTTCTACATAACACACATACTGGTTAGGTTTAGGACAGCTTACGTAGCTCCCTCGTCCAGGATCTTTGGAAGAGGAGAGCTCGTGATTCACCCTTCTAAGATTGCTGCTAACTATCTCGTTTTCGAGTTTTGGCTTCATTTTGTTGCTGCATTACCTCTTCCACAGGCATTCGTATGGGTTGCAATACCAAAAATGAGGGCATGGAGTTACTTTGTTCGTTTCTCCATTTTGTTACAATACCTTCTGAGGTTGTATCTCATCTTCCCTTTATCTGATCAAATCATTAAGGCCACTGGAGTTTTGATGAAAACAGCTTGGGTTGGAGCTGGTTATAACCTAATGCTCTTTATGCTAGCAAGCCATGTTTTGGGATCATGTTGGTACCTTTTATCCATAGGAAGACAAATGGAATGCTGGAAAAAAGTGTGCAATTTGGGGCAGCATTTGGATTGCCAATATGAGCTTTTTTATTGTAAAGCTTTACAGAGAGATTCAAATAAAGCTGCTTGGTTTCAACATTATCAAGCAACCAATATTTCAAATTTATGTCATCCAAGTGCCACCAATTTCTTTCACTTTGGGATCTTTTCTGATTCTTTTGCTTCAACTTCTTCCCCCTTCTTCACTAGGTACTTGTATTGTTTCTGGTGGGGATTGAGGAATTTAAGCTCTCTAGGACAAAATTTGCTAACAAGTAGCAATGTGGGAGAAATCAATTTCGCCATTGTGATTGCCATTGTTGGGTTGGTGCTTTTCGCTCTTCTTATTGGAAATATGCAAACTTATCTCCAATCAACGACATTAAGACTAGAAGAATGGAGAGTAAGAAGAAGAGACACGGAGCAATGGATGCACCACAGACAATTACCAAATCAATTAAAACAAAGCGTAAGAAATTACGAACAATTCCGATGGATGGCAACTCACGGCGTCGACGAACAACACATTCTAAAATCCCTTCCTCTCGATCTCCGACGACAAATCAAACGCCATCTCTGTCTCGATCTCCTCCGTCAAGTTCCTCTGTTCGACGAAATGGAAGAAAGAATGTTAGACGCAATTTGCGAGCGATTAAAACCCTGTTTGAGCACTTCCAACACTTGTTTACTTCGAGAAGGCGACCCAGTTAATGAAATGTTGTTTATAATCCGTGGCCATCTGGATTCCCACACCACCAACGGCGGCCGGACTGGGTTTTTCAATTCGAGCCGTCTTGGGCCGAGTGATTTCTGCGGTGAGGAGTTGCTTCCTTGGGCGTTGGATGATCCTGGGGCCGCAGCGGTGTTGCCGTCTTCCACGAGGACGGTGACGGCGGTGACGGAGGTGGAAGGGTTTGCGCTTGTGGCGGAGGATTTGAAGTTTGTGGCAGCGCAATTTCGGAGGCTGCATAGTAAGCAGATTAGGTGTACTTTTAGGTTTCACTCGCAGCAGTGGCGGACGTGGGCGGCGTGTTTTATTCAGGCGGCGTGGGTTAGGTATAAGCGGCGGCAGAAGAAGGAAGGTGAGATTAATGTTGTGAGGAAGATGAGTGTTGTTCGTCATAGGTCGTTGGTGAAGCCGCTTCAAATTGATTTCTCGGTGGAAGATAGATGA 1941 45.23 MPTSSRWRSVTTTVRFQDEELENGEAGRRRKRGRRKCEGMFCDSDQDYDVVKGMVLDPNLPILNKWNRVFLVACLVSLFVDPVFFFLPVVNVEEGCVEMSGALGVALTVVRSMADVFYITHILVRFRTAYVAPSSRIFGRGELVIHPSKIAANYLVFEFWLHFVAALPLPQAFVWVAIPKMRAWSYFVRFSILLQYLLRLYLIFPLSDQIIKATGVLMKTAWVGAGYNLMLFMLASHVLGSCWYLLSIGRQMECWKKVCNLGQHLDCQYELFYCKALQRDSNKAAWFQHYQATNISNLCHPSATNFFHFGIFSDSFASTSSPFFTRYLYCFWWGLRNLSSLGQNLLTSSNVGEINFAIVIAIVGLVLFALLIGNMQTYLQSTTLRLEEWRVRRRDTEQWMHHRQLPNQLKQSVRNYEQFRWMATHGVDEQHILKSLPLDLRRQIKRHLCLDLLRQVPLFDEMEERMLDAICERLKPCLSTSNTCLLREGDPVNEMLFIIRGHLDSHTTNGGRTGFFNSSRLGPSDFCGEELLPWALDDPGAAAVLPSSTRTVTAVTEVEGFALVAEDLKFVAAQFRRLHSKQIRCTFRFHSQQWRTWAACFIQAAWVRYKRRQKKEGEINVVRKMSVVRHRSLVKPLQIDFSVEDR 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28540023 28544110 + CrPI670011_04g009950.1 Cre04g0995 495299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0995 646 ProSiteProfiles cAMP/cGMP binding motif profile. 458 544 IPR000595 -
Cre04g0995 646 FunFam Cyclic nucleotide-gated ion channel 1 456 575 - -
Cre04g0995 646 SUPERFAMILY Voltage-gated potassium channels 65 380 - -
Cre04g0995 646 FunFam Cyclic nucleotide-gated ion channel 1 385 449 - -
Cre04g0995 646 Gene3D Jelly Rolls 456 577 IPR014710 -
Cre04g0995 646 SUPERFAMILY cAMP-binding domain-like 388 579 IPR018490 -
Cre04g0995 646 CDD CAP_ED 458 578 IPR000595 -
Cre04g0995 646 Pfam Ion transport protein 68 385 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g0995 646 SMART cnmp_10 458 590 IPR000595 -
Cre04g0995 646 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 45 619 - -
Cre04g0995 646 Gene3D - 73 382 - -
Cre04g0995 646 Gene3D Helix hairpin bin 386 449 - -
Cre04g0995 646 PRINTS EAG/ELK/ERG potassium channel family signature 122 131 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre04g0995 646 PRINTS EAG/ELK/ERG potassium channel family signature 421 428 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre04g0995 646 PRINTS EAG/ELK/ERG potassium channel family signature 353 364 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre04g0995 646 PRINTS EAG/ELK/ERG potassium channel family signature 234 244 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre04g0995 646 PRINTS EAG/ELK/ERG potassium channel family signature 371 380 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2431 Cre-Chr2:37689519 Cre04g0995 Cre-Chr4:28540023 3.70E-216 dispersed
Cre04g0995 Cre-Chr4:28540023 Cre06g2161 Cre-Chr6:29450966 1.80E-177 dispersed
Cre04g0995 Cre-Chr4:28540023 Cre10g1579 Cre-Chr10:29826647 7.10E-174 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0995 K05391 - csv:101221856 1050.43