Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g0998 ATGATTACGTTTATGGATTCGAAAGAGAAATTGAAAGAGGTGGAGAAATGTTTAGATCCTCAGTTATGGCATGCTTGTGCTGGAGGAATGGTTCAAATGCCGCCGGTGAACGCCAGGGTTTTCTATTTTCCACAAGGCCATGCGGAGCATTCTTGTGCTCCAGTTGATTTCAGGAACTGTCCTAAGGTTCCTTCATATACCCTATGCAGAGTTTCTGCCATCAAGTTCCTTGCAGATCCTGACACTGATGAAGTGTTTGCTAAACTTAGGTTGATTCCCATAAATGGAAATGAACTAGATTTTGAAGATGATGGAATTGGGAGGCTTAATGGGACTGAACAAGATAAGCCAACTTCATTTGCAAAGACACTGACTCAATCTGATGCTAACAATGGTGGGGGCTTCTCTGTTCCAAGGTATTGTGCAGAAACCATCTTCCCTCGGTTGGATTATTCTGCTGATCCACCTGTTCAGACCATTCTTGCCAAGGATGTTCATGGCGAGACATGGAAATTCAGGCACATTTACCGAGGGACGCCTCGCCGGCATCTTTTGACTACTGGCTGGAGTACTTTTGTTAATCATAAGAAGCTCGTTGCTGGTGATTCCATTGTTTTTTTGAGGGCAGAAAATGGAGATCTCTGCGTCGGGATTAGACGGGCGAAAAGGGGAATTGGGGATGGACCGGAGTCGTCGTGTGGATGGAATCCAGCAGGTGGCAACTGTGCTGTCCCATATGGAGCGTTCTCCTCATTTTTGAGGGAAGATGACAACAGATTGACGAGGTCTGCTAATGGCATGAATGGAAATGGAAGTCTTATGGGAAAGGGGAAAGTGAAGCCTGAATCAGTTATTGAAGCTGCTACACTTGCTGCAAATGGACAACCCTTTGAAATAGTATTCTATCCAAGAGCTAGTACTCCTGAATTCTGCGTCAAGGCAGCACTGGTTAAAGCGGCATTGCAGATCCGTTGGTGCTCAGGTATGAGGTTCAAGATGGCCTTTGAAACCGAGGACTCTTCACGAATTAGCTGGTTCATGGGTACCATCAATTCGGTTCAGGTTTCTGACCCACTGCGCTGGCCTGAGTCACCATGGAGGCTTCTTCAGGTTACATGGGATGAACCAGATTTACTTCAGAATGTGAAACGCGTTAGCCCATGGTTGGTTGAATTGGTATCAAACATGTCTCCAATTCACCTAGCCCCCTTCTCACCACCAAGGAAAAAGCTCAGATATCCACAACACCCTGATTTCCCTCTCGATAACCAACCTCCTGTGCCATCGTTCTCTAGTTATCTCCATGGGACTGGCAGCCCCTTCGGTTGTCCTCCCGACAACAACCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTTTGGTCTATCCTTGTCAGATTTTCATCTCAGTAAACTGCAGTCAGGTCTGTTTTCGATTGGTTATCGATCACTGGATCCAGCTGCTGGATCAACTAGACTTTCTGGTAATGCAATGACTGAAAAACCAAGTATGAGTGAAAACGTATCTTGCTTGCTAACCATGGCACATTCTACTCAAGCTTCAAAGAAATTTGACGGCGTAAAGACTCCTCAGCTAATACTTTTTGGCCGACCTATACTTACAGAATTGCAGATGTCCCAAAGCTTCTCCGGCGATACGGTTTCTCCAGTTAATACTGGAAATAGTTCATCAGATGGAAATGGAGACAAAACGGCAAATTTCTCCGATGGCTCTGGATCTGCTTTACATCAACAAGGTCTACCAGAAGGCTCGGCTTGCGAAAATTTCCAATGGTACAAGGACAATCGCCAAGAAATCGAGCCTATCTTGGATACCGGCCACTGTAAAGTCTTTATGGAATCAGAAGATGTAGGTCGCACCCTCGATCTTTCTTCACTTGGGTCTTATGAAGAATTGTACAGAAAACTTGGAAATATGTTTGGTATAGATAATTCAGAGACATTGAATCATGTCTTGTACCGTGATGTTTCCGGTGCTGTCAAGCATATCGGTGACGAACAATTCAGTGACTTCATCAAGACAGCCAGAAGATTGACAATTCTAACAGATTCAGGAAGTAACAATGTAGGAGCTTAG 2097 45.16 MITFMDSKEKLKEVEKCLDPQLWHACAGGMVQMPPVNARVFYFPQGHAEHSCAPVDFRNCPKVPSYTLCRVSAIKFLADPDTDEVFAKLRLIPINGNELDFEDDGIGRLNGTEQDKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGDGPESSCGWNPAGGNCAVPYGAFSSFLREDDNRLTRSANGMNGNGSLMGKGKVKPESVIEAATLAANGQPFEIVFYPRASTPEFCVKAALVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTINSVQVSDPLRWPESPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMSPIHLAPFSPPRKKLRYPQHPDFPLDNQPPVPSFSSYLHGTGSPFGCPPDNNPAGMQGARHAHFGLSLSDFHLSKLQSGLFSIGYRSLDPAAGSTRLSGNAMTEKPSMSENVSCLLTMAHSTQASKKFDGVKTPQLILFGRPILTELQMSQSFSGDTVSPVNTGNSSSDGNGDKTANFSDGSGSALHQQGLPEGSACENFQWYKDNRQEIEPILDTGHCKVFMESEDVGRTLDLSSLGSYEELYRKLGNMFGIDNSETLNHVLYRDVSGAVKHIGDEQFSDFIKTARRLTILTDSGSNNVGA 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28593359 28595781 + CrPI670011_04g009980.1 Cre04g0998 495302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g0998 698 MobiDBLite consensus disorder prediction 550 586 - -
Cre04g0998 698 Pfam Auxin response factor 287 370 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre04g0998 698 ProSiteProfiles PB1 domain profile. 612 692 IPR053793 -
Cre04g0998 698 Gene3D - 611 696 - -
Cre04g0998 698 Gene3D - 324 398 - -
Cre04g0998 698 Gene3D - 118 222 IPR015300 -
Cre04g0998 698 SUPERFAMILY DNA-binding pseudobarrel domain 113 226 IPR015300 -
Cre04g0998 698 FunFam Auxin response factor 118 222 - -
Cre04g0998 698 FunFam Auxin response factor 325 398 - -
Cre04g0998 698 MobiDBLite consensus disorder prediction 550 585 - -
Cre04g0998 698 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 694 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre04g0998 698 CDD B3_DNA 119 220 IPR003340 GO:0003677(InterPro)
Cre04g0998 698 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677(InterPro)
Cre04g0998 698 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677(InterPro)
Cre04g0998 698 SMART B3_2 120 222 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2429 Cre-Chr2:37637346 Cre04g0998 Cre-Chr4:28593359 3.70E-264 dispersed
Cre04g0998 Cre-Chr4:28593359 Cre08g1024 Cre-Chr8:23401708 2.30E-93 dispersed
Cre02g2408 Cre-Chr2:37450912 Cre04g0998 Cre-Chr4:28593359 1.70E-63 wgd
Cre04g0998 Cre-Chr4:28593359 Cre08g0705 Cre-Chr8:20032569 1.40E-212 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53431 PF02362 B3 1.50E-21 CL0405 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g0998 K14486 - csv:101217039 1392.48