Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1001 ATGGCGGAATCCGGTCACCAAAATGGCTTCGAGTTTTGCATCGGCGGCCGGAACAATATCAACCACGATCCGTTGAATTGGGGAGTGGCAGCGGAGTCGTTGAAGGGAAGCCATTTGGAAGAAGTGAAGCGGATGGTGGAAGAATACCGGCGGCCGGTGGTGAAGCTGGGAGGAGAGACGCTGACGATATCTCAGGTGGCAGCGATCGCCGCCAAGGATTCCGGCGTGGCGGTGGAGCTGTCGGAGTCGGCGAGAGGCAGCGTTGAGGCCAGCAGTAAGTGGGTGATGGACAGCATGAATCAAGGGACTGATAGCTACGGCGTCACCACCGGCTTCGGCGCCACCTCCCACCGCCGGACTAAAGAAGGTGGCGCTCTGCAGAGGGAGCTCATACGATTTTTGAATTCGGGAATATTTGGAAATGGCATTGAATCGAGTCACACTTTGCCTCACTCAGCAACGAGAGCAGCCATGTTGGTTAGAATTAACACTCTCCTTCAAGGCTACTCGGGCATTAGGTTTGAAATTTTGGAAGCCATAACCAAACTTCTCAACCACAACATCACCCCATGTTTGCCACTTCGAGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTTACTGGCCGACCGAACTCTAAAGCTATTGGTCCAAATGGAGAAAGTCTTGATGCGAAGGAGGCTTTCAAACAAGCTGGTATTTCGTCTGGGTTCTTTGAGTTGCAACCTAAGGAAGGGTTGGCTCTCGTCAATGGGACTGCTGTTGGTTCGGGGTTAGCATCTATTGTTCTTTTTGAGGCAAACGTTTTGGCAGTTTTAGCTGAGATTTTGTCTGCTATTTTTGCTGAGGTTATGCAAGGAAAGCCTGAATTTACAGATCATTTGACACACAAGTTAAAGCATCATCCAGGTCAGATTGAGGCAGCTGCAATCATGGAACACATTCTGGATGGAAGTTCTTATGTTAAAGAAGCTAAAAAATTGCATGAAATTGATCCTCTTCAGAAGCCAAAACAAGATCGCTACGCTCTTAGAACGTCACCTCAATGGCTTGGTCCATTAATTGAGGTCATTAGATTTTCTACCAAGTCAATTGAGCGAGAGATTAATTCGGTTAATGATAATCCTTTGATTGACGTTTCAAGGAACAAGGCTGTACATGGAGGTAACTTCCAGGGAACGCCAATCGGTGTCTCGATGGACAACACTCGCTTGGCTATAGCTTCGATTGGTAAGCTCATTTTCGCTCAATTTTCTGAGCTTGTTAATGATTTCTACAACAATGGTTTACCTTCAAATCTCTCTGCCAGTAGAAACCCAAGTTTAGATTATGGATTCAAAGGTACCGAAATTGCTATGGCTTCCTATTGCTCTGAGCTTCAATATTTAGCCAACCCAGTAACAAGCCATGTCCAAAGTGCTGAGCAACATAATCAAGATGTTAACTCTCTTGGTTTAATCTCCTCGAGAAAAACAGAAGAAGCCATTGACATTTTGAAACTCATGTCTTCAACATTTTTAGTTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAAGAAAATTTAAAGAGTACAGTGAAAAACACAATAAGCCAAGTGGCCAAGAAGGTCCTTACCACCGATGCTAATGGAGCTCTCCACCCATCAAGATTTTGTGAGAAGGATTTACTCAAAATTGTTGATAGAGAATACACCTTTGCTTACATTGATGACCCATGCAGTGCCACTTATCCGTTAATGCAGAAGTTAAGACAAGTTCTTGTAGAACATGCACTTGCAAATGGAGAAGATGAGAAGAACCCAAATAGTTCAATCTTTCAAAAGATTGGTGTCTTTGAGGAGGAACTAAAAGCTGTTTTGCCCAAGGAGGTAGAAAGTGCAAGGTTTGCTTATGAAAATGGGAACTTTACCATTCAAAATCAAATTAAGGAATGTCGGTCATATCCACTCTACAAGTTTGTGAGAACTGAGTTAGGAACTGAGTTACTTACAGGAGAGAAGGTAAAATCTCCTGGAGAAGTGTGCGAGAAAGTGTTTATCGCTTTATGTCAAGGAAAGATGATTGACCCAATCTTAGAGTGTTTAAAAGAGTGGAATGGTGCTCCAATCCCTATTTGCTAA 2145 44.01 MAESGHQNGFEFCIGGRNNINHDPLNWGVAAESLKGSHLEEVKRMVEEYRRPVVKLGGETLTISQVAAIAAKDSGVAVELSESARGSVEASSKWVMDSMNQGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNSGIFGNGIESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGESLDAKEAFKQAGISSGFFELQPKEGLALVNGTAVGSGLASIVLFEANVLAVLAEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKEAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKAVHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGTEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTEEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTISQVAKKVLTTDANGALHPSRFCEKDLLKIVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALANGEDEKNPNSSIFQKIGVFEEELKAVLPKEVESARFAYENGNFTIQNQIKECRSYPLYKFVRTELGTELLTGEKVKSPGEVCEKVFIALCQGKMIDPILECLKEWNGAPIPIC 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28642727 28645816 + CrPI670011_04g010010.1 Cre04g1001 495305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1001 714 NCBIfam phenylalanine ammonia-lyase 23 704 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cre04g1001 714 Gene3D Fumarase/aspartase (Central domain) 261 709 - -
Cre04g1001 714 Pfam Aromatic amino acid lyase 61 539 IPR001106 -
Cre04g1001 714 Gene3D - 527 648 IPR023144 -
Cre04g1001 714 PANTHER HISTIDINE AMMONIA-LYASE 20 714 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cre04g1001 714 FunFam Phenylalanine ammonia-lyase 527 648 - -
Cre04g1001 714 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 196 212 IPR022313 GO:0016841(InterPro)
Cre04g1001 714 Gene3D - 14 260 IPR024083 -
Cre04g1001 714 CDD PAL-HAL 59 524 IPR001106 -
Cre04g1001 714 FunFam Phenylalanine ammonia-lyase 261 568 - -
Cre04g1001 714 FunFam Phenylalanine ammonia-lyase 16 260 - -
Cre04g1001 714 SUPERFAMILY L-aspartase-like 23 714 IPR008948 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1001 Cre-Chr4:28642727 Cre04g1003 Cre-Chr4:28659291 0.00E+00 dispersed
Cre04g1001 Cre-Chr4:28642727 Cre04g1002 Cre-Chr4:28652211 0.00E+00 tandem
Cre03g1799 Cre-Chr3:34826582 Cre04g1001 Cre-Chr4:28642727 1.50E-236 transposed
Cre02g2437 Cre-Chr2:37747868 Cre04g1001 Cre-Chr4:28642727 0.00E+00 wgd
Cre04g1001 Cre-Chr4:28642727 Cre08g0711 Cre-Chr8:20130380 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1001 K10775 - csv:101217907 1348.57