Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1002 ATGGCACCCGTTGATCAAACCAATGATAGCTTTTGCACCATTACTACTCATCCTGACCCACTAAATTGGGGTTTGGCTGCTGATTCCCTCAAGGGAAGCCATCTCGATGAGGTGAAGCGCATGGTCGAAGAGTATCGAAGGCCTCTTGTCAAGCTTGGTGGTGAAACTCTTACCATTTCTCAAGTGGCTGCTATTGCTACTCGGGATTCTGATGTTACTGTTGAGCTTTCTGAGTCTGCTAGAGCTGGTGTTAAGGCTAGTAGTGATTGGGTTATGGAGAGTATGAATAAAGGGACTGATAGTTATGGTGTAACTACTGGGTTTGGTGCTACATCTCATAGAAGGACCAAACAAGGTGGTGCTCTTCAGAAGGAGTTGATTAGATTTTTGAATGCTGGGATTTTTGGAAGTGGAGCTGAATCTGATCATACTTTGCCTCATTCGGCTACGAGGGCGGCTATGTTGGTGAGGATCAACACTCTTCTTCAAGGCTACTCAGGTATTAGATTTGAGATTTTGGAAGCGATTACCAAACTTTTGAACCATAATATCACTCCATGCTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGTCGGCCGAATTCTAAAGCTGTTGGTCCAAATGGAGAAAGTCTTGATGCAAAGGAGGCTTTCCAACAGGCTGGTATTCCATCTGGGTTCTTTGAGTTGCAGCCTAAGGAAGGGCTGGCTCTTGTCAATGGCACAGCTGTTGGTTCTGGATTGGCTTCTATTGTTCTCTTTGAGGCAAATATTTTGGCTGTTTTGTCTGAGATTTTGTCTGCCATATTTGCTGAAGTTATGCAAGGCAAGCCTGAATTTACTGACCATTTGACCCATAAGCTGAAGCATCATCCTGGCCAGATTGAGGCAGCTGCAATCATGGAACACATTTTGGATGGGAGTTCTTACATGAAAACAGCCAAGAAGTTGCACGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGCTACGCCCTTAGAACTTCACCCCAATGGTTAGGTCCATTGATTGAAGTGATTCGGTTCTCAACAAAATCGATTGAGCGGGAGATTAATTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGACAACACTCGTCTGGCTATTGCTTCAATTGGAAAACTCATTTTTGCTCAATTTTCAGAGCTTGTCAATGATTTCTACAATAATGGATTACCCTCAAATCTCTCTGCAAGCAGAAACCCAAGTTTGGATTATGGATTCAAAGGTGCTGAGATCGCCATGGCTTCCTATTGCTCTGAGCTTCAATATCTAGCGAATCCTGTAACTAGTCATGTCCAAAGTGCTGAGCAACATAATCAAGATGTCAACTCTCTCGGTTTGATCTCTTCAAGAAAAACAGCTGAGGCTATTGACATTTTGAAGCTCATGTCATCCACATTTTTGGTTGCTCTTTGCCAAGCAATTGACTTGAGACATTTGGAAGAAAACCTGAAGAATGTAGTGAAGAACACAGTAAGTCAAGTGGCTAAAAAAGTTCTCACCACCGGTGCTAATGGTGCACTTCACCCATCAAGATTTTGTGAAAAAGATTTATTGAAGATGGTCGACAGAGAATACACCTTTGCCTACGTCGATGATGCGTGCAATGCGACTTACCCATTGATGCAAAAACTAAGACAAGTTCTTGTTGAACATGCTATGGGAAATGGTGAAGATGAAAAGAACATAAACACTTCAGTTTTTCAAAAGATTGGAGTTTTTGAGGAGGAATTGAAAGCCATGTTGCCGAAAGAAGTAGAAAATGCAAGACTCTCCTATGAAAATGGAACGTCCACCATTGAAAACCAAATTAAAGAATGCAGATCTTATCCACTATACAAGTTTGTGAGAGAGGAGTTGGGAACTGGGTTGTTGACTGGAGAGAGGGTGGTATCTCCAGGAGAAGAGTGTGAAAAAGTATTCACAGCTCTTTGCCAAGGAAAGATGATTGATCCAATTTTAGAGTGTTTGAAGGAGTGGAATGGTGCTCCAATCCCCATTTGCTAG 2133 42.71 MAPVDQTNDSFCTITTHPDPLNWGLAADSLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVTVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNVVKNTVSQVAKKVLTTGANGALHPSRFCEKDLLKMVDREYTFAYVDDACNATYPLMQKLRQVLVEHAMGNGEDEKNINTSVFQKIGVFEEELKAMLPKEVENARLSYENGTSTIENQIKECRSYPLYKFVREELGTGLLTGERVVSPGEECEKVFTALCQGKMIDPILECLKEWNGAPIPIC 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28652211 28654343 + CrPI670011_04g010020.1 Cre04g1002 495306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1002 710 Gene3D Fumarase/aspartase (Central domain) 257 705 - -
Cre04g1002 710 FunFam Phenylalanine ammonia-lyase 523 644 - -
Cre04g1002 710 FunFam Phenylalanine ammonia-lyase 11 256 - -
Cre04g1002 710 SUPERFAMILY L-aspartase-like 19 710 IPR008948 GO:0003824(InterPro)
Cre04g1002 710 NCBIfam phenylalanine ammonia-lyase 19 700 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cre04g1002 710 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 192 208 IPR022313 GO:0016841(InterPro)
Cre04g1002 710 FunFam Phenylalanine ammonia-lyase 257 565 - -
Cre04g1002 710 Gene3D - 11 256 IPR024083 -
Cre04g1002 710 Pfam Aromatic amino acid lyase 57 535 IPR001106 -
Cre04g1002 710 PANTHER HISTIDINE AMMONIA-LYASE 17 710 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cre04g1002 710 CDD PAL-HAL 55 520 IPR001106 -
Cre04g1002 710 Gene3D - 523 644 IPR023144 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1002 Cre-Chr4:28652211 Cre04g1004 Cre-Chr4:28664051 0.00E+00 dispersed
Cre04g1001 Cre-Chr4:28642727 Cre04g1002 Cre-Chr4:28652211 0.00E+00 tandem
Cre04g1002 Cre-Chr4:28652211 Cre04g1003 Cre-Chr4:28659291 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1002 K10775 - csv:101218144 1365.9