Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1003 ATGGCATCTTTTCAAAAGATTGAAGACAACTTGTGCCATGGCCATAGTGATCCACTCAATTGGGGGGAGGCTGCTGATTCCCTCAAGGGAAGCCATCTCGATGAGGTGAAGCGCATGGTCGAAGAGTATCGGAGGCCTCTTGTCAAGCTTGGTGGTGAAACTCTTACCATTTCTCAAGTTGCTGCTATTGCTACTCGAGATTCTGATGTTACTGTTGAGCTTTCTGAGTCTGCTAGAGCTGGTGTTAAGGCTAGTAGTGATTGGGTTATGGAGAGTATGAATAAAGGGACTGATAGTTATGGTGTAACTACTGGGTTTGGTGCTACATCTCATAGAAGGACCAAACAAGGTGGTGCTCTTCAGAAGGAGTTGATTAGATTTTTGAATGCTGGGATTTTTGGAAGTGGAGCTGAATCTGATCATACTTTGCCTCATTCGGCTACGAGGGCGGCTATGTTGGTGAGGATCAACACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCGATTACCAAACTTTTGAACCATAATATCACTCCATGCTTGCCTCTCCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGTCGGCCGAATTCTAAAGCTGTTGGTCCAAATGGAGAAAGTCTTGATGCAAAGGAGGCTTTCCAACAGGCTGGTATTCCATCTGGGTTCTTTGAGTTGCAGCCTAAGGAAGGGCTGGCTCTTGTCAATGGCACAGCTGTTGGTTCTGGATTGGCTTCTATTGTTCTCTTTGAGGCAAATATTTTGGCTGTTTTGTCTGAGATTTTGTCTGCCATATTTGCTGAAGTTATGCAAGGCAAGCCTGAATTTACTGACCATTTGACCCATAAGCTGAAGCATCATCCTGGCCAGATTGAGGCAGCTGCAATCATGGAACACATTTTGGATGGGAGTTCTTACATGAAAACAGCCAAGAAGTTGCACGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGCTACGCCCTTAGAACTTCACCCCAATGGTTAGGTCCATTGATTGAAGTGATTCGGTTCTCAACAAAATCGATTGAGCGGGAGATTAATTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGACAACACTCGTCTGGCTATTGCTTCAATTGGAAAACTCATTTTTGCTCAATTTTCAGAGCTTGTCAATGATTTCTACAATAATGGATTACCCTCAAATCTCTCTGCAAGCAGAAACCCAAGTTTGGATTATGGATTCAAAGGTGCTGAGATCGCCATGGCTTCCTATTGCTCTGAGCTTCAATATCTAGCGAATCCTGTAACTAGTCATGTCCAAAGTGCTGAGCAACATAATCAAGATGTCAACTCTCTCGGTTTGATCTCTTCAAGAAAAACAGCTGAGGCTATTGACATTTTGAAGCTCATGTCATCCACATTTTTGGTTGCTCTTTGCCAAGCAATTGACTTGAGACACCTAGAAGAGAACTTGAAGAACACAGTAAAAAATACAGTGAGCCAAGTGGCGAAGAAAGTCCTCACAACTAGCTCAAATGGCACACTTCATCCTTCAAGATTTTGCGAGAAAGATTTACTCAAAGTGGTTGATAGAGAATACACTTTTGCTTACATTGACGATCCATGCAGTGCTACTTATCCATTGATGCAAAAGTTAAGACAAGTTATTGTCGAGCATGCTTTGAATAATGGAGAGGACGAAAAAGACCTAAGTACTTCAATCTTTCAAAAAATTGGAACCTTTGAAGAGGAATTGAAGGCCATTTTGCCTAAAGAAGTCGAAAGTGTCAGATTGGCATATGAAAATGGAGATGCAACCATTGAGAACCAAATTAAGGAATGCAGATCTTACCCATTATACAAGTTTGTGAGGAAAGAGTTGGGCACTAACTTGTTAACCGGGGAGAAGGTTATATCTCCAGGAGAAGAGTGCGAAAAGGTTTTTACGGCATTGTGTCAAGGAAAGATGATTGACCCTATTTTAGAATGCTTGAAGGAATGGAATGGGGCTCCAATTCCCATATATTAA 2127 42.41 MASFQKIEDNLCHGHSDPLNWGEAADSLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVTVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKKVLTTSSNGTLHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVIVEHALNNGEDEKDLSTSIFQKIGTFEEELKAILPKEVESVRLAYENGDATIENQIKECRSYPLYKFVRKELGTNLLTGEKVISPGEECEKVFTALCQGKMIDPILECLKEWNGAPIPIY 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28659291 28661417 + CrPI670011_04g010030.1 Cre04g1003 495307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1003 708 FunFam Phenylalanine ammonia-lyase 8 254 - -
Cre04g1003 708 CDD PAL-HAL 53 518 IPR001106 -
Cre04g1003 708 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 190 206 IPR022313 GO:0016841(InterPro)
Cre04g1003 708 SUPERFAMILY L-aspartase-like 17 707 IPR008948 GO:0003824(InterPro)
Cre04g1003 708 NCBIfam phenylalanine ammonia-lyase 17 698 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cre04g1003 708 PANTHER HISTIDINE AMMONIA-LYASE 14 707 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cre04g1003 708 Pfam Aromatic amino acid lyase 55 534 IPR001106 -
Cre04g1003 708 Gene3D Fumarase/aspartase (Central domain) 255 703 - -
Cre04g1003 708 FunFam Phenylalanine ammonia-lyase 255 560 - -
Cre04g1003 708 FunFam Phenylalanine ammonia-lyase 521 642 - -
Cre04g1003 708 Gene3D - 521 642 IPR023144 -
Cre04g1003 708 Gene3D - 9 254 IPR024083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2437 Cre-Chr2:37747868 Cre04g1003 Cre-Chr4:28659291 0.00E+00 dispersed
Cre03g1799 Cre-Chr3:34826582 Cre04g1003 Cre-Chr4:28659291 1.40E-239 dispersed
Cre04g1001 Cre-Chr4:28642727 Cre04g1003 Cre-Chr4:28659291 0.00E+00 dispersed
Cre04g1003 Cre-Chr4:28659291 Cre04g1006 Cre-Chr4:28673471 0.00E+00 dispersed
Cre04g1002 Cre-Chr4:28652211 Cre04g1003 Cre-Chr4:28659291 0.00E+00 tandem
Cre04g1003 Cre-Chr4:28659291 Cre04g1004 Cre-Chr4:28664051 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1003 K10775 - csv:101218382 1357.43