Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1004 ATGGCACCGACTCAATTCCAGCAACAGAATGGTTCAATGGAGAGCTTGTGCACTAGCCAAAACGATCCACTCAACTGGGGTGTGGCCGCCGAGTCCCTCAAGGGAAGCCATCTCGATGAGGTGAAGCGCATGGTTGAGGAGTACCGGAGGCCCCTTGTCAAGCTGGGTGGTGAAACCCTCACTATTTCCCAAGTAGCTGCTATTGCTACTCGGGACTCTGATGTTACGGTTGAACTTTCTGAGTCTGCTAGAGTTGGTGTTAAAGCTAGCAGTGATTGGGTTATGGAGAGTATGAACAAAGGGACTGATAGTTATGGTGTTACTACTGGGTTTGGTGCTACGTCTCATAGAAGGACCAAACAAGGAGGTGCTCTTCAGAAGGAGTTGATTAGATTTTTGAACGCTGGGATTTTTGGAAATGGAGCTGAGTCTGATCATACTTTGCCCCACTCAGCGACAAGGGCGGCCATGTTGGTGAGAATCAATACTCTTCTTCAAGGCTACTCAGGTATTAGATTTGAGATTTTGGAAGCTATAACCAAACTTTTGAACCATAACATTACTCCATGCTTGCCTCTTCGTGGAACAATTACTGCTTCTGGAGATCTTGTTCCACTTTCTTATATTGCTGGAGTGCTCACTGGACGACCTAACTCCAAGGCGATTGGACCCAACGGAGAACATATTGACGCCAAGGAGGCTTTCCAACAAGCTGGTATTCCTTCTGGGTTCTTCGAATTGCAGCCTAAGGAAGGCCTTGCTCTTGTTAATGGTACTGCTGTCGGATCAGGATTGGCTTCTATTGTCCTCTTTGAGGCAAATATTTTGACTGTTCTGGCAGAAATTCTTTCTGCTATTTTTGCTGAGGTCATGCAAGGAAAGCCAGAATTTACTGATCATTTGACTCATAAGTTGAAGCACCATCCTGGTCAAATTGAAGCAGCTGCAATTATGGAGCACATTTTGGATGGAAGCTCTTACATGAAAGCAGCCAAGAAATTGCATGAAATTGATCCCCTCCAAAAGCCCAAACAAGATCGATATGCTCTAAGAACTTCACCTCAATGGCTTGGTCCCTTGATTGAAGTGATTCGATTCTCTACAAAATCTATTGAGCGAGAGATTAACTCCGTCAATGACAACCCTTTGATTGACGTTTCAAGAAACAAAGCACTACATGGAGGCAACTTTCAAGGAACACCAATTGGAGTTTCCATGGACAACACTCGATTGGCCATTGCTTCTATTGGGAAGCTCATGTTTGCCCAATTCTCAGAACTTGTTAATGATTTCTACAACAACGGTTTGCCATCTAATCTTTCTGCAAGTAGAAATCCGAGTTTGGATTATGGGTTTAAAGGAGCTGAAATTGCCATGGCTTCATACTGCTCTGAGCTTCAATACCTTGCAAATCCAGTGACAAGCCATGTTCAAAGCGCCGAGCAACACAACCAAGATGTTAACTCTCTAGGTTTAATTTCTTCAAGGAAAACAGCTGAAGCCATTGATATTCTGAAACTCATGTCATCTACATTTTTGGTTGCTCTCTGCCAAGCAATTGACTTAAGGCATTTGGAGGAAAACTTGAAAAGCACTGTGAAAAGCACTGTTAGCCAAATAGCCAAGAAAGTATTGACCACATCCTCTAATGGCGCACTTCACCCCTCAAGATTTTGTGAGAAAGATCTACTCAAAGTCGTTGATAGAGAGTACACATTTGCTTATATCGACGATCCATGTAGTGCTACTTATCCATTGAGCCAAAAGTTGAGGCAAGTTCTTGTTGAGCATGCACTTGCAAACGGTGATGATGAAAAGAACCCAAACACTTCAATCTTCCAAAAGATTGTTTCTTTCGAGGAGGAACTAAAGGCAATATTACCCAAGGAAGTTGAAAATGCAAGGTTGGCCTATGAGAGTGGAAATTCTAAAATTGAAAATCAGATCAAGAATTGTAGATCATATCCGTTGTATAGATTTGTAAGAGAAGAGTTGGAAACAAAAATGCTAACGGGAGAAAGAGTGATATCTCCGGGAGAAGAGTGTGAGAAAGTATTTACAGCTTTGTGTCAAGGTAAGATGATAGACTCGATCTTAGAGTGCTTAAAGGAGTGGAATGGTGCTCCAATTCCTATTTGCTAA 2142 42.62 MAPTQFQQQNGSMESLCTSQNDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVTVELSESARVGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGVLTGRPNSKAIGPNGEHIDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILTVLAEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSTVSQIAKKVLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLSQKLRQVLVEHALANGDDEKNPNTSIFQKIVSFEEELKAILPKEVENARLAYESGNSKIENQIKNCRSYPLYRFVREELETKMLTGERVISPGEECEKVFTALCQGKMIDSILECLKEWNGAPIPIC 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28664051 28666192 - CrPI670011_04g010040.1 Cre04g1004 495308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1004 713 CDD PAL-HAL 58 523 IPR001106 -
Cre04g1004 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841(InterPro)
Cre04g1004 713 Gene3D Fumarase/aspartase (Central domain) 260 708 - -
Cre04g1004 713 FunFam Phenylalanine ammonia-lyase 526 647 - -
Cre04g1004 713 FunFam Phenylalanine ammonia-lyase 13 259 - -
Cre04g1004 713 NCBIfam phenylalanine ammonia-lyase 22 703 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cre04g1004 713 Gene3D - 526 647 IPR023144 -
Cre04g1004 713 FunFam Phenylalanine ammonia-lyase 260 561 - -
Cre04g1004 713 PANTHER HISTIDINE AMMONIA-LYASE 18 713 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cre04g1004 713 SUPERFAMILY L-aspartase-like 22 713 IPR008948 GO:0003824(InterPro)
Cre04g1004 713 Gene3D - 14 259 IPR024083 -
Cre04g1004 713 Pfam Aromatic amino acid lyase 60 536 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1002 Cre-Chr4:28652211 Cre04g1004 Cre-Chr4:28664051 0.00E+00 dispersed
Cre04g1004 Cre-Chr4:28664051 Cre07g1549 Cre-Chr7:30913399 0.00E+00 dispersed
Cre04g1003 Cre-Chr4:28659291 Cre04g1004 Cre-Chr4:28664051 0.00E+00 tandem
Cre04g1004 Cre-Chr4:28664051 Cre04g1005 Cre-Chr4:28669078 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1004 K10775 - csv:101218617 1343.18