Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1005 ATGGCACCTGCCCAATTGGAACAATGTGCTCACCATAATGGCTCAATCGAGAGCTTTTGCACAAGCCATGTTGATCCACTCAATTGGGGTGTGGCAGCTGATGCTCTCAAGGGAAGTCATCTTGATGAGGTGAAGAGGATGGTGGAAGAGTATAGACGGCCTATGGTGAAGCTTGGGGGTGAGACTCTTACTATTTCTCAAGTGGCTGCTATTGCCACTCGTGATAATGATGTGGTTGTAGAATTGGCTGAGTCTGCTAGAGCAGGTGTTAAAGCTAGTAGTGATTGGGTGATGGAGAGTATGAGTAAAGGGACTGATAGTTATGGTGTTACTACTGGATTTGGTGCTACATCTCATAGAAGGACCAAACAAGGTGGGGCTCTTCAGAAGGAGTTGATTCGGTTTTTGAATGCTGGAATTTTTGGAAATGGGGCTGAGTCGAATCATACTTTGCCTCATTCGGCGACGAGGGCAGCCATGTTGGTGAGGATCAATACTCTGCTTCAAGGCTATTCGGGTATTCGATTTGAGATTTTGGAAGCTATTGCTAATCTTCTCAATCAAAACATTACTCCATGTTTGCCACTGCGAGGAACAATTACAGCATCTGGGGATCTTGTCCCTTTGTCGTATATTGCTGGGCTACTTACCGGTCGTCATAATTCCAAGGCCATTGGGCCTAATGGGGAAACTCTTGACGCAGAGACTGCCTTTAAAAAAGCTGGCATTCCTTCTGGCTTCTTCGAGTTGCAACCCAAAGAAGGCCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGATTGGCTTCTATTGTCCTATTTGAGGCAAATATATTGGCTATTTTGTCAGAAATTCTTTCTGCTATTTTTGCTGAGGTCATGCAAGGAAAGCCTGAATTCACCGATCATTTGACTCACAAGTTGAAACATCATCCTGGTCAGATTGAAGCAGCTGCAATCATGGAGCACATTTTGGATGGAAGTTCTTACATGAAAACAGCTAAGAAACTACATGAAATTGATCCCCTCCAAAAGCCCAAACAAGATCGTTATGCCCTTAGAACTTCACCCCAATGGTTGGGTCCATTGATTGAAGTTATTCGGTTCTCAACAAAGTCTATTGAACGAGAGATTAATTCAGTCAATGACAACCCTTTGATTGATGTTTCAAGAAACAAGGCATTGCATGGAGGCAACTTCCAAGGAACACCGATTGGAGTTTCCATGGACAACACGCGGTTGGCCATTGCTTCAATTGGGAAGCTCATGTTTGCCCAATTCTCTGAACTTGTCAACGATTTTTACAACAACGGCTTGCCTTCTAACCTTTCTGCAAGTAGAAATCCAAGCTTGGATTATGGGTTTAAAGGAGCTGAAATTGCCATGGCTTCATACTGCTCTGAGCTTCAATACCTTGCAAATCCGGTGACAAGTCATGTCCAAAGTGCTGAACAACATAACCAAGATGTTAATTCTCTTGGTTTAATTTCTTCGAGAAAAACAGCTGAAGCCATTGATATCTTGAAACTCATGTCGTCAACATTTTTAGTTGCACTCTGCCAAGCAATTGACTTGAGGCACTTGGAGGAAAACTTGAAGAGCACAGTTAAAAGCATAGTGAGCCAAGTAGCCAAGAAGATGTTGACGACATCCTCCAATGGTGCACTACACCCATCAAGATTTTGTGAGAAAGATCTACTTAAAGTCGTTGATAGAGAATACACATTTGCATACATTGATGATCCATGCAGCGCCACTTATCCGTTGATGCAAAAATTGAGACAAGTACTGGTTGAACATGCACTCACCAATGGCGAAAATGAAAAGGACATGAACACTTCCATCTTCCAAAAGATTACTGCTTTTGAAGAGGAATTAAAGGCAATTTTACCAAAGGAAATTGAAAACGCAAGGTTGGCATATGAGAGTGGAAATTCTAAAATTGCAAATCAAATTAAGGATTGCAGATCCTATCCATTATATAGATTTGTGAGAGAAGACTTGGGAACAAAACTTTTGACCGGAGAAAGGGTTATATCTCCTGGAGAAGAATGCGAGAAGGTATTTACAGCTTTGTGCCAAGGAAAGATGATTGACTCTATCTTAGAGTGCTTAAAAGAGTGGAATGGTGCTCCCATTCCTATCCGTTGA 2151 42.31 MAPAQLEQCAHHNGSIESFCTSHVDPLNWGVAADALKGSHLDEVKRMVEEYRRPMVKLGGETLTISQVAAIATRDNDVVVELAESARAGVKASSDWVMESMSKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGAESNHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIANLLNQNITPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPNGETLDAETAFKKAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAILSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSIVSQVAKKMLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALTNGENEKDMNTSIFQKITAFEEELKAILPKEIENARLAYESGNSKIANQIKDCRSYPLYRFVREDLGTKLLTGERVISPGEECEKVFTALCQGKMIDSILECLKEWNGAPIPIR 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28669078 28671228 - CrPI670011_04g010050.1 Cre04g1005 495309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1005 716 NCBIfam phenylalanine ammonia-lyase 25 706 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cre04g1005 716 CDD PAL-HAL 61 526 IPR001106 -
Cre04g1005 716 FunFam Phenylalanine ammonia-lyase 16 262 - -
Cre04g1005 716 Pfam Aromatic amino acid lyase 63 542 IPR001106 -
Cre04g1005 716 Gene3D - 17 262 IPR024083 -
Cre04g1005 716 PANTHER HISTIDINE AMMONIA-LYASE 20 715 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cre04g1005 716 FunFam Phenylalanine ammonia-lyase 529 650 - -
Cre04g1005 716 Gene3D - 529 650 IPR023144 -
Cre04g1005 716 FunFam Phenylalanine ammonia-lyase 263 572 - -
Cre04g1005 716 SUPERFAMILY L-aspartase-like 25 715 IPR008948 GO:0003824(InterPro)
Cre04g1005 716 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 198 214 IPR022313 GO:0016841(InterPro)
Cre04g1005 716 Gene3D Fumarase/aspartase (Central domain) 263 711 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1005 Cre-Chr4:28669078 Cre07g1549 Cre-Chr7:30913399 0.00E+00 dispersed
Cre04g1004 Cre-Chr4:28664051 Cre04g1005 Cre-Chr4:28669078 0.00E+00 tandem
Cre04g1005 Cre-Chr4:28669078 Cre04g1006 Cre-Chr4:28673471 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1005 K10775 - csv:101222092 1345.1