Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1006 ATGGCCCCAATTGAGACCATCTGCAAGAGCTCCATTCATGACCCACTCAACTGGGGTGTAGCTGCTGAGTCCCTCAAGGGAAGCCATCTTGATGAGGTGAAGCGCATGGTGGAAGAGTATCGAAGGCCCCTTGTCAAGCTTGGAGGTGAAACCCTCACCATTTCGCAAGTAGCTGCCATTGCTACTCGAGATTTTGATGTTGTTGTTGAGCTTTCCGAGTCTGCTAGAGCGGGTGTTAAAGCTAGTAGTGATTGGGTTATGGAGAGCATGAACAAAGGCACTGATAGTTACGGAGTTACTACTGGTTTTGGTGCTACGTCTCATAGGAGGACAAAACAAGGTGGGGCTCTTCAAAAGGAGCTTATTCGATTCTTGAATGCTGGGATCTTTGGAAATGGGACCGAGTCGAGTCATACTTTGCCTCATTCAGCTACAAGAGCGGCCATGTTGGTGAGAATCAACACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATCACCAAACTCTTGAACAATAACATCACCCCGTGTTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGTCGACCGAATTCTAAAGCTGTTGGTCCAAATGGTGAAAGACTTGATGCAAAGGAGGCTTTCCAACAAGCTGGCATTCCATCGGGGTTCTTCGAATTGCAGCCTAAGGAAGGGTTGGCTCTTGTTAATGGCACTGCCGTTGGTTCTGGATTGGCTTCTATTGTTCTTTTTGAGGCAAATATTTTGGTTGTCTTATCTGAGATTTTGTCTGCCATTTTTGCTGAAGTTATGCAAGGAAAGCCTGAATTTACAGACCATTTGACCCACAAGTTGAAACATCATCCTGGCCAGATTGAAGCAGCTGCAATCATAGAACACATTTTGGATGGGAGTTCTTACATGAAAACGGCCAAGAAGTTGCATGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGTTATGCCCTTAGAACTTCACCCCAATGGTTGGGTCCATTGATTGAAGTTATTCGGTTCTCAACAAAGTCTATTGAACGAGAGATTAATTCAGTTAACGATAATCCTTTGATTGATGTTTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGACAACACTCGTTTGGCTATTGCTTCAATTGGAAAGCTCATGTTTGCTCAATTTTCTGAACTTGTCAATGATTTCTACAACAATGGTTTACCTTCTAACCTTTCTGCAAGTAGAAATCCGAGCTTGGATTATGGGTTTAAAGGTGCTGAAATTTCTATGGCTTCATACTGCTCTGAGCTTCAATATCTTGCAGATCCAGTGACAAGCCATGTTCAAAGTGCAGAACAACACAACCAAGATGTTAATTCTCTTGGTTTGATTTCTTCAAGAAAAACAGCTGAAGCCATTGATATTCTGAAACTCATGTCTTCCACCTTTTTGGTTGCTCTTTGCCAAGCAATTGACTTGAGGCATTTGGAAGAAAACTTGAAGAACACGGTTAAAACCATTGTAAGCCAAGTGGCGAAAAAAGTTTTGACCACATCCTTTAGTGGTGCACTTCACCCATCGAGATTTTGTGAGAAAGACTTATTGAAGGTTGTTGACAGAGAGTATACTTTTGCATATATAGACGATCCATGCAGTGCCACGTATCCACTAATGCAGAAGTTGAGGCAAGTTCTTGTTGAGCACGCACTTGCAAATGGTGATGACGAAAAGAATGCAAGCACTTCAATCTTCCAAAAGATTGCTACTTTTGAGGAGGAACTAAAGGTAGTTTTACCAAAAGCAATTGAAAATACAAGGTTGGCATACGAGAGTGGAAAAGCACCTATTAAGAATCAAATTGAAGAATGCAGATCTTATCCATTATACAAATTTGTGAGGAAAGAGTTAGGAACAAATCTGTTAACAGGTGAAAAAGTGATATCTCCGGGGGAAGAATGTGAAAAGGTATTCACGGCTTTGTGTCAAGGAAAGATGATTGATTCTATCTTAGAATGTTTGAATGAGTGGAATGGAGCTCCAATTCCCATATGTTAG 2118 42.07 MAPIETICKSSIHDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDFDVVVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGERLDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILVVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIIEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEISMASYCSELQYLADPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNTVKTIVSQVAKKVLTTSFSGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALANGDDEKNASTSIFQKIATFEEELKVVLPKAIENTRLAYESGKAPIKNQIEECRSYPLYKFVRKELGTNLLTGEKVISPGEECEKVFTALCQGKMIDSILECLNEWNGAPIPIC 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28673471 28675588 - CrPI670011_04g010060.1 Cre04g1006 495310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1006 705 FunFam Phenylalanine ammonia-lyase 518 639 - -
Cre04g1006 705 Pfam Aromatic amino acid lyase 52 531 IPR001106 -
Cre04g1006 705 SUPERFAMILY L-aspartase-like 14 705 IPR008948 GO:0003824(InterPro)
Cre04g1006 705 FunFam Phenylalanine ammonia-lyase 6 251 - -
Cre04g1006 705 Gene3D Fumarase/aspartase (Central domain) 252 700 - -
Cre04g1006 705 PANTHER HISTIDINE AMMONIA-LYASE 10 705 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cre04g1006 705 FunFam Phenylalanine ammonia-lyase 252 560 - -
Cre04g1006 705 CDD PAL-HAL 50 515 IPR001106 -
Cre04g1006 705 Gene3D - 518 639 IPR023144 -
Cre04g1006 705 NCBIfam phenylalanine ammonia-lyase 14 695 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cre04g1006 705 Gene3D - 6 251 IPR024083 -
Cre04g1006 705 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 187 203 IPR022313 GO:0016841(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1003 Cre-Chr4:28659291 Cre04g1006 Cre-Chr4:28673471 0.00E+00 dispersed
Cre04g1006 Cre-Chr4:28673471 Cre07g1548 Cre-Chr7:30908171 0.00E+00 dispersed
Cre04g1005 Cre-Chr4:28669078 Cre04g1006 Cre-Chr4:28673471 0.00E+00 tandem
Cre04g1006 Cre-Chr4:28673471 Cre04g1007 Cre-Chr4:28677317 1.10E-61 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1006 K10775 - csv:101218856 1327.38