Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1031 ATGCTGGCCACAACCTGCATTGTGCTGCTAGCTTTGCTGCTACCCTCCAGCTTGCCGCTCCGTGCCGGTGCTGGTACCCCCGCCGCCGCTCTCAACCTCACTCTCCCCGGCCAGCATCCGAGCCCTGAACTGGTTGCTCAAGAAGTTCACAGGAAAGTAAATGCTTCCTTAACGAGAAGGCAATTGCTCCAAATCTCAGAGAAGGATGATTCTTCTTCTTGCTACACCGGGAACCCCATCGACGACTGCTGGAAATGCGATCCAAATTGGCCAAACAACCGCCAGCGCCTCGCCGATTGCGCCATAGGATTCGGCCAGTACGCTCTCGGCGGCAAAAATGGCGAGTTCTACATAGTCACAGACGATTCGGACGACGATGCGGTAAATCCAAAGCCCGGAACATTACGATACGCCGTGATACAGCCGCAACCTCTCTGGATCGTCTTCCCCGCCAACATGCTCATCAAACTCAAACAGGAACTCATCTTCAACAGCTTCAAAACCCTAGACGGCCGCGGCGCCAATGTCCATATAGTCGGCGGTGGCTGCATTACATTGCAGTACATAAGCAATGTCATCATCCACAACATCCATATCCACCATTGTTATCCATCAGGTAACACCCTGGTCCGATCAAGTCCGACGCATTACGGGTACCGGACGAAATCGGACGGCGACGGGATATCGATCTTCGGATCGAAGGATATATGGATTGATCATTGTTCATTGTCGCATTGCAAAGATGGGCTGATCGATGCGGTGATGGGCTCCACCGGAATCACGATTTCAAACAATTATTTCTCACATCACGATGAAGTTATGCTGTTGGGTCACAGCGATCACTACTTGCCGGATTCCGGAATGCAGGTTACAATAGCATTCAACCACTTCGGAGAGAAGCTAGTGCAAAGGATGCCACGATGCCGATTAGGTTACATTCACGTCGTCAACAACGACTTCACCCAATGGGAAATGTACGCAATCGGCGGCAGTGGAAACCCCACCATCAACAGCCAAGGCAACCGCTACACCGCCCCTTACGACCGCAACGCCAAGGAAGTAACCAAGCGAGTCGAAACTTCCGAGTCCGAGTGGCGCGGCTGGAACTGGCGCTCCGAGGGCGATATCCTCGTAAACGGCGCTTTCTTCGTCACTTCCGGCCAAGGCCTTGAAGTCAAGTACGAGAAGGCTTACAGCGTCGAACCTAAGTCCGCCGCCCTAATTGACCAGCTCACTTGGCACGCCGGCCCGCTCGGCGTCGGCGGCAGGGACAATAATTTGGGAATGTGGACTACTGGCCCTAATGGCGGAGGCTTTGCGCTTGGGTCTGGGATGGATTACACTGACGACATGTCGGAAAGTTATTTTGTTAGGGTTTTTTCTCTTTTGTTGTGCTCTTTTTGCGCATTGGTGCTTGCCTTTGTGCTATGA 1431 52.9 MLATTCIVLLALLLPSSLPLRAGAGTPAAALNLTLPGQHPSPELVAQEVHRKVNASLTRRQLLQISEKDDSSSCYTGNPIDDCWKCDPNWPNNRQRLADCAIGFGQYALGGKNGEFYIVTDDSDDDAVNPKPGTLRYAVIQPQPLWIVFPANMLIKLKQELIFNSFKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCYPSGNTLVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDHYLPDSGMQVTIAFNHFGEKLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPYDRNAKEVTKRVETSESEWRGWNWRSEGDILVNGAFFVTSGQGLEVKYEKAYSVEPKSAALIDQLTWHAGPLGVGGRDNNLGMWTTGPNGGGFALGSGMDYTDDMSESYFVRVFSLLLCSFCALVLAFVL 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28914331 28917554 + CrPI670011_04g010310.1 Cre04g1031 495335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1031 476 Gene3D - 77 419 IPR012334 -
Cre04g1031 476 PRINTS Pollen allergen Amb family signature 397 420 IPR018082 -
Cre04g1031 476 PRINTS Pollen allergen Amb family signature 124 149 IPR018082 -
Cre04g1031 476 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Cre04g1031 476 PRINTS Pollen allergen Amb family signature 368 392 IPR018082 -
Cre04g1031 476 PRINTS Pollen allergen Amb family signature 160 176 IPR018082 -
Cre04g1031 476 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Cre04g1031 476 PRINTS Pollen allergen Amb family signature 224 245 IPR018082 -
Cre04g1031 476 PRINTS Pollen allergen Amb family signature 100 117 IPR018082 -
Cre04g1031 476 FunFam Pectate lyase 77 419 - -
Cre04g1031 476 Pfam Pectate lyase 158 341 IPR002022 -
Cre04g1031 476 SMART amb_all 152 349 IPR002022 -
Cre04g1031 476 PANTHER PECTATE LYASE 18-RELATED 24 420 IPR045032 GO:0030570(InterPro)
Cre04g1031 476 SUPERFAMILY Pectin lyase-like 73 402 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1031 Cre-Chr4:28914331 Cre05g2309 Cre-Chr5:34642720 1.50E-181 dispersed
Cre04g1031 Cre-Chr4:28914331 Cre08g0734 Cre-Chr8:20400979 2.70E-178 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1031 K01728 - csv:101203012 920.613