Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1037 ATGCCGATCCGTAACATTGCAATTGGAAGGCCCGAAGAGGCTACTCATCCAGATGCTTTGAAGGCTGGGTTGGCTGAGTTCATTTCCACCTTGATCTTTGTTTTTGCTGGCCAAGGTTCCGGCATAGCCTTCAGTAAGCTTACCGAAGGCGGCGCCACCACTCCCGCCGGTCTCATCTCCGCCTCCATCGCCCACGCCTTTGCCCTTTTTGTTGCCGTCTCCGTTGGCGCTAACATCTCTGGTGGCCATGTCAACCCCGCCGTTACCTTCGGTGCCTTCGTCGGTGGTAACATCACCCTCCTACGTGGCATCATCTACTGGATTGCTCAACTCCTTGGATCCGTTGTCGCTTGCTTGCTCCTTAAATTCGTCACCGGCTTGCCCACCGGAAGCTTCGCTCTGTCAGCTGGAGTTGGAGAAATAAACGCCTTCGTTTTCGAGATCGTAATGACCTTCGGATTGGTGTACACAGTGTACGCGACCGCAGTGGATCCCAAGAAGGGCAGTTTGGGAACTATTGCACCCATCGCAATCGGTTTCATCGTCGGAGCTAACATTTTGGCCGGCGGAGCATTCACCGGAGCATCCATGAACCCGGCCGTGGCCTTCGGCCCATCAGTAGTGAGCTGGTCATGGAGCAGCCACTGGGTCTACTGGGCCGGGCCTCTGATCGGAGGTGGGCTTGCTGGTCTCATCTACGAGTTCATCTTCATTTCCAACACCCACGAGCAGCTCCCAACCACCGACTACTAA 753 55.51 MPIRNIAIGRPEEATHPDALKAGLAEFISTLIFVFAGQGSGIAFSKLTEGGATTPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIIYWIAQLLGSVVACLLLKFVTGLPTGSFALSAGVGEINAFVFEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILAGGAFTGASMNPAVAFGPSVVSWSWSSHWVYWAGPLIGGGLAGLIYEFIFISNTHEQLPTTDY 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28958360 28959590 - CrPI670011_04g010370.1 Cre04g1037 495341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1037 250 CDD MIP 21 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g1037 250 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
Cre04g1037 250 SUPERFAMILY Aquaporin-like 13 246 IPR023271 -
Cre04g1037 250 FunFam Probable aquaporin TIP1-1 4 250 - -
Cre04g1037 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g1037 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Cre04g1037 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g1037 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g1037 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g1037 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g1037 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g1037 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g1037 250 PANTHER AQUAPORIN-8 5 246 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1037 Cre-Chr4:28958360 Cre05g2278 Cre-Chr5:34358408 2.70E-28 dispersed
Cre01g0456 Cre-Chr1:3882330 Cre04g1037 Cre-Chr4:28958360 4.00E-96 transposed
Cre01g1353 Cre-Chr1:26723823 Cre04g1037 Cre-Chr4:28958360 2.70E-80 transposed
Cre08g1168 Cre-Chr8:24914205 Cre04g1037 Cre-Chr4:28958360 1.40E-64 transposed
Cre09g0171 Cre-Chr9:1957490 Cre04g1037 Cre-Chr4:28958360 3.10E-77 transposed
Cre09g2028 Cre-Chr9:39387254 Cre04g1037 Cre-Chr4:28958360 1.10E-43 transposed
Cre09g2106 Cre-Chr9:40055183 Cre04g1037 Cre-Chr4:28958360 1.20E-79 transposed
Cre10g2107 Cre-Chr10:35677890 Cre04g1037 Cre-Chr4:28958360 3.70E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1037 K09873 - csv:101204225 463.766