Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1043 ATGGCCAAGCTATTATCATTGTCAACGCAAGGCCTATGGGCATCTCTGCTAATCGTGTTGTCGCATGTAATTTCTCATTCAAACGCAGCAGCCTCATTGAGACGTCTCCCGCCTTATGCAAAAGCGCGCAGGCAATTAGGAGGCGCGCAGTTTATTAAAAAGCATCACAGGCCGCCGTTTAAGCCCGGCCCTTGGAAGCACGCTCACGCTACCTTCTATGAAGGTGGCTCCGGAACCTTCGGTGGTGCATGTGGGTACGACGACGTGGAAAAGGAAGGGTATGGAATGCAGACGGCGGCGCTTAGCATGGCGCTGTTCAACAACGGGCAGAGCTGCGGCGCTTGCTTTGAAATCAAATGCATTGACGATCCACAGCGGTGCAAGCCCGGGCAGCCGTCGCTCATGGTAACCGGCACCAACCACTGCCCGCCGAACTACAACCTTGCTAGTGACAATGGCGGATGGTGCAATCCCCCCCTCGAGCATTTCGATATAGCCAAGCCTGTTTTTCTCAACATTGCTGAGTTCAAGGCTGGCATTGTTCCTATCACTTACCGCAGGGTTCCATGCAAAAAGCAAGGAGGAATTCGATTCACAATAACTGGGAATCCTTATTTCAACCAAGTGTTAGTGTGGAACGTAGGGGGAGCTGGAGATGTGACAAGTGTCCAAGTGAAGGGTCACCGTAAGCTGAAATGGACAACCATGTCTCGATCGTGGGGTCAAAAATGGGTCACCAACGCCATGATGGTTGGCGAGTCTCTCACCTTCAGGGTTCGAACCAGTGATGGCAAATTCTCCACTTCATGGCACATTGCTCCCACCAATTGGCAGTTTGGGGTTTACTCAATTAATTTCGCCATTAAAAACAATTGTCCGTTCCCAATTTGGCCGGGAGCTTTAACCGGTGCCGGCAACCAACTATCAACCACTGGCTTCGAATTACTCCCCGGATCAACAACAACGGTAACGACTTCTCCGCCGTGGTCCGGCAGATTTTGGGCAAGAACACTCTGTTCCACTGATGCAAGTGGAAAGTTCTCTTGCGCAACCGCCGATTGTGGCAGTGGCCAAGTCACATGTAACGGCGCCGGCGGAATTCCGCCAGCAAGCCTAGTGGAATTCACAATTGCGCCAAGCGGCGGCCAAGATTTCTTCGACATCAGCCTTGTCGATGGCTTCAATTTACCTGTTTCAGTGGCGCCAATTGGCGGTTCGGGTGGGGCGTGCCAAACGGTACTTTGTACAGGAAATGTAAATGCTGTTTGTCCACTGGAATTAGCCATTACAGATGAAGGTGGCGCAGTGATCGCTTGTAAAAGTGCTTGTATGGCCTTTAATCAGCCTGAATATTGCTGCAGTGGCGACCATAATCAGCCGGAAACTTGCCCGCCGACCAATTATTCAATGATTTTCAAGAATCAGTGTCCGCAAGCTTATAGCTACGCTTATGATGATAAGACAAGTACTTTTACTTGCACGGGTGGAGCTGATTATGCCATCACATTTTGTCCTTGA 1518 50.66 MAKLLSLSTQGLWASLLIVLSHVISHSNAAASLRRLPPYAKARRQLGGAQFIKKHHRPPFKPGPWKHAHATFYEGGSGTFGGACGYDDVEKEGYGMQTAALSMALFNNGQSCGACFEIKCIDDPQRCKPGQPSLMVTGTNHCPPNYNLASDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPITYRRVPCKKQGGIRFTITGNPYFNQVLVWNVGGAGDVTSVQVKGHRKLKWTTMSRSWGQKWVTNAMMVGESLTFRVRTSDGKFSTSWHIAPTNWQFGVYSINFAIKNNCPFPIWPGALTGAGNQLSTTGFELLPGSTTTVTTSPPWSGRFWARTLCSTDASGKFSCATADCGSGQVTCNGAGGIPPASLVEFTIAPSGGQDFFDISLVDGFNLPVSVAPIGGSGGACQTVLCTGNVNAVCPLELAITDEGGAVIACKSACMAFNQPEYCCSGDHNQPETCPPTNYSMIFKNQCPQAYSYAYDDKTSTFTCTGGADYAITFCP 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29056033 29062175 + CrPI670011_04g010430.1 Cre04g1043 495347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1043 505 SMART tha2 286 505 IPR001938 -
Cre04g1043 505 Pfam Thaumatin family 290 505 IPR001938 -
Cre04g1043 505 PRINTS Expansin signature 271 287 IPR002963 GO:0009664(InterPro)
Cre04g1043 505 PRINTS Expansin signature 242 263 IPR002963 GO:0009664(InterPro)
Cre04g1043 505 PRINTS Expansin signature 170 183 IPR002963 GO:0009664(InterPro)
Cre04g1043 505 PRINTS Expansin signature 134 144 IPR002963 GO:0009664(InterPro)
Cre04g1043 505 PRINTS Expansin signature 93 107 IPR002963 GO:0009664(InterPro)
Cre04g1043 505 PRINTS Expansin signature 153 170 IPR002963 GO:0009664(InterPro)
Cre04g1043 505 PRINTS Expansin signature 194 206 IPR002963 GO:0009664(InterPro)
Cre04g1043 505 PRINTS Expansin signature 206 227 IPR002963 GO:0009664(InterPro)
Cre04g1043 505 PRINTS Expansin signature 120 131 IPR002963 GO:0009664(InterPro)
Cre04g1043 505 Gene3D - 194 286 IPR036749 -
Cre04g1043 505 SMART dpbb_1 98 185 IPR007112 -
Cre04g1043 505 SUPERFAMILY Osmotin, thaumatin-like protein 285 505 IPR037176 -
Cre04g1043 505 FunFam THAUMATIN-LIKE PROTEIN 1 284 505 - -
Cre04g1043 505 CDD TLP-PA 286 504 - -
Cre04g1043 505 PANTHER EXPANSIN-A15 35 280 IPR002963 GO:0009664(InterPro)
Cre04g1043 505 Pfam Expansin C-terminal domain 196 274 IPR007117 -
Cre04g1043 505 CDD DPBB_EXPA_N 64 190 - -
Cre04g1043 505 SUPERFAMILY PHL pollen allergen 192 281 IPR036749 -
Cre04g1043 505 Pfam Lytic transglycolase 98 185 IPR009009 -
Cre04g1043 505 Gene3D - 51 191 IPR036908 -
Cre04g1043 505 Gene3D Thaumatin 287 505 IPR037176 -
Cre04g1043 505 ProSiteProfiles Thaumatin family profile. 283 505 IPR001938 -
Cre04g1043 505 SUPERFAMILY Barwin-like endoglucanases 64 213 IPR036908 -
Cre04g1043 505 ProSitePatterns Thaumatin family signature. 345 361 IPR017949 -
Cre04g1043 505 PRINTS Expansin/Lol pI family signature 178 194 IPR007118 GO:0005576(InterPro)
Cre04g1043 505 PRINTS Expansin/Lol pI family signature 271 285 IPR007118 GO:0005576(InterPro)
Cre04g1043 505 PRINTS Expansin/Lol pI family signature 102 120 IPR007118 GO:0005576(InterPro)
Cre04g1043 505 PRINTS Expansin/Lol pI family signature 64 79 IPR007118 GO:0005576(InterPro)
Cre04g1043 505 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576(InterPro)
Cre04g1043 505 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 81 195 IPR007112 -
Cre04g1043 505 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 205 280 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1043 Cre-Chr4:29056033 Cre07g0690 Cre-Chr7:4766594 2.60E-86 dispersed
Cre08g0146 Cre-Chr8:3125832 Cre04g1043 Cre-Chr4:29056033 1.80E-109 transposed
Cre08g0218 Cre-Chr8:5676356 Cre04g1043 Cre-Chr4:29056033 1.50E-111 transposed
Cre10g2101 Cre-Chr10:35623245 Cre04g1043 Cre-Chr4:29056033 1.40E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1043 - - - 0.0