Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1055 ATGGAAGCTCTTCTTCTCAACGCACCCACTTCACATCCAATTGCTCGAAAGTCTCTCCTTCCATCCCAACCCTCCTTCTTCAATGGAACCTCCATTCCTATTGATGACAATCGTAGCAGAATTAGACTTCCCAGGCCTCCATTCATCCAAGCCACGCTTTCAAAACACACCGTTGAGATCCCTCCCAATTCTGTATCCAACACTTCGGTTGCGACTCTTGGAGATGCATTGGCGGCTACACCTTTGCCTCCTCGCAAAAGGGTGTCGGCCGATTCGCTGCAGTTCCCGCCTGGCTATCTCGGTGCTGTTCCGGACCGCTCCGGTTCTGATGATGATGCTGAGGGTAGTCTCAACGCCATGGAGTATTTGACCAGAATCTTGGGTTCGAAGGTGTACGATGTGGCTATTGAATCGCCGTTGCAGCTTGCGCCGACGTTGTCTGAACGTTTGGGGGTGAATATCTGGCTCAAGAGGGAGGACTTGCAGCCCGTGTTCTCATTCAAGCTCCGAGGAGCTTATAATATGATGGCCAAACTTCCAAAAGAACAGTTGGAAAAAGGAGTTATATGCTCTTCAGCTGGAAATCATGCTCAAGGGGTTGCATTAGCGGCTAAGCGATTAAGATGTAATGCTGTAATTGCTATGCCTGTTACTACCCCTGAAATTAAGTGGCAATCAGTTCAAAAGTTGGGTGCAACTGTTGTTCTTGTTGGAGATTCATATGATGAGGCACAGGCATATGCTAAAAAGCGGAGTGTAGAGGAAGGCCGCACGTTCATACCACCTTTTGATCACCCTGATGTTATAGCAGGGCAGGGTACAGTTGGGATGGAAATTGTGCGTCAAATGAAGAACCCAGTGCATGCAATTTTTGTGCCTGTTGGGGGTGGTGGTCTAATAGCTGGTATTGCTGCTTATGTCAAGAGGGTTTCTCCTGAGGTAAAGATTATTGGGGTGGAGCCATCTGATGCAAATGCTATGGCATTATCATTATGTCATGGCCAAAGAGTAATATTGGACAAGGCTGGAGGTTTTGCTGATGGTGTAGCAGTTAAAGAAGTCGGTGAAGAGACTTTTCGTCTTTGCAAAGATCTCATGGATGGTGTAGTTCTTGTTAGCCGAGATTCTATCTGTGCCTCAATAAAGGATATGTTTGAGGAGAAGAGAAGCATCTTGGAACCTGCAGGCGCTCTTTCTCTTGCTGGAGCTGAGGCATACTGCAAATATTATGGCTTGAAGGGAGAAAATGTTGTGGTAATAACCAGTGGTGCAAATATGAACTTTGACAAACTGAGAATAGTTACTGAACTTGCCAATGTTGGTCGTGAACAAGAGGCTGTGCTCGCAACTATATTGCCGGAAATACCTGGAAGCTTTAAAAAATTTTGTGAACTGGTTGGGCCTATGAATATTACAGAATTCAAGTATAGATATAGTTCTGAAAAGGAAGCGGTTGTTCTTTATAGTGTCGGTATGCATATGCCTTCTGAACTAGAAGAAATGAAGAATCGGATGAAATCGTCTCAGCTTGAAACTTATAATCTCACAAATAATGATCTTGTAAAGGATCACCTGCGTTACTTGATGGGAGGCAAATCAAATGTTGAAAACGAAGTTCTATGTCGTTTTATTTTCCCAGAAAGGCCAGGTGCTCTAGAGAAGTTCTTAGATGCTTTTAGTCCTCGCTGGAACATTAGTTTGTTTCACTATCATGGGAAGGGTGAAACTGGTGCAAATATCTTAGTTGGGCTTCAGATTGAGAAATCGGAAATGGGTGAATTCCATGAACGTGCTCGGAGGGTCGGATACGATTACGTTGTGGTAACTGACGACGGTATCTTTCAGCTTCTGATGCGTCATAGACCAACTCACAAGGCCACAAGTCTCTTGAGTTAA 1896 44.78 MEALLLNAPTSHPIARKSLLPSQPSFFNGTSIPIDDNRSRIRLPRPPFIQATLSKHTVEIPPNSVSNTSVATLGDALAATPLPPRKRVSADSLQFPPGYLGAVPDRSGSDDDAEGSLNAMEYLTRILGSKVYDVAIESPLQLAPTLSERLGVNIWLKREDLQPVFSFKLRGAYNMMAKLPKEQLEKGVICSSAGNHAQGVALAAKRLRCNAVIAMPVTTPEIKWQSVQKLGATVVLVGDSYDEAQAYAKKRSVEEGRTFIPPFDHPDVIAGQGTVGMEIVRQMKNPVHAIFVPVGGGGLIAGIAAYVKRVSPEVKIIGVEPSDANAMALSLCHGQRVILDKAGGFADGVAVKEVGEETFRLCKDLMDGVVLVSRDSICASIKDMFEEKRSILEPAGALSLAGAEAYCKYYGLKGENVVVITSGANMNFDKLRIVTELANVGREQEAVLATILPEIPGSFKKFCELVGPMNITEFKYRYSSEKEAVVLYSVGMHMPSELEEMKNRMKSSQLETYNLTNNDLVKDHLRYLMGGKSNVENEVLCRFIFPERPGALEKFLDAFSPRWNISLFHYHGKGETGANILVGLQIEKSEMGEFHERARRVGYDYVVVTDDGIFQLLMRHRPTHKATSLLS 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29206940 29211742 + CrPI670011_04g010550.1 Cre04g1055 495359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1055 631 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 159 172 IPR000634 GO:0006520(InterPro)|GO:0030170(InterPro)
Cre04g1055 631 Gene3D - 171 262 IPR036052 -
Cre04g1055 631 ProSiteProfiles ACT-like domain profile. 539 610 IPR001721 -
Cre04g1055 631 CDD ACT_ThrD-I_2 538 618 - -
Cre04g1055 631 PANTHER THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED 126 609 IPR050147 GO:0003941(PANTHER)|GO:0004794(PANTHER)|GO:0006565(PANTHER)|GO:0006567(PANTHER)|GO:0009097(PANTHER)
Cre04g1055 631 Pfam Pyridoxal-phosphate dependent enzyme 137 423 IPR001926 -
Cre04g1055 631 SUPERFAMILY ACT-like 526 618 IPR045865 -
Cre04g1055 631 FunFam Threonine dehydratase 445 619 - -
Cre04g1055 631 NCBIfam threonine ammonia-lyase, biosynthetic 121 617 IPR005787 GO:0004794(InterPro)|GO:0009097(InterPro)
Cre04g1055 631 Gene3D Biosynthetic Threonine Deaminase; Domain 3 445 619 IPR038110 -
Cre04g1055 631 CDD ACT_ThrD-I_1 445 528 - -
Cre04g1055 631 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 120 473 IPR036052 -
Cre04g1055 631 CDD Thr-dehyd 123 427 - -
Cre04g1055 631 ProSiteProfiles ACT-like domain profile. 446 517 IPR001721 -
Cre04g1055 631 Pfam C-terminal regulatory domain of Threonine dehydratase 436 525 IPR001721 -
Cre04g1055 631 Pfam C-terminal regulatory domain of Threonine dehydratase 530 616 IPR001721 -
Cre04g1055 631 Gene3D - 139 417 IPR036052 -
Cre04g1055 631 FunFam L-threonine dehydratase 237 417 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1051 Cre-Chr4:29164545 Cre04g1055 Cre-Chr4:29206940 5.70E-197 dispersed
Cre04g1052 Cre-Chr4:29177006 Cre04g1055 Cre-Chr4:29206940 3.70E-105 dispersed
Cre04g1053 Cre-Chr4:29190721 Cre04g1055 Cre-Chr4:29206940 8.90E-166 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1055 K01754 - csv:101205909 1136.32