Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1072 ATGGAAATGCCTGGAAGGAGGTCAGATTACTCGCTTTTAAGTCAAATTCCGGACGAGGAGGTTGGAACGGGAGCTTCCACTTCCTTTTACGACTCAATAGCAGCTGGCGGAAACGTTTACAAGGGGAGAACCGATAGAGTTTTTGATTGGGACGGGAGTGGTGATCACAGGTTAAACACGCAAGCGAATCGGATAGGGAACCTGTATTCATGGATTGGTTTGCAGAGGCATTCTAGTGGAAGCAGCTACGATGATAGCTCTCTCTCCAGTGATTACTACGCGCCGACGCTCTCAAACGCTGCAGCAAATGAGATCAATGCATTGGGATATATCAACGACGATGAATTCAGAGTGAAAACTTTGGCAAGTGGAGGTTCGTCAGGAAAGAGCTGGGCGCAGCAGACGGAAGAGAGTTATCAATTGCAGCAGGCTTTGGCTCTCAGGCTTTCTTCAGAGGCTACTTGTGCCGATGATCCCAACTTTATGGATCCGATGCCAGACGAGGCAGCTTTAAGATCGTTGTCGAGTTCAGCTGAGGCCACCTCGCATCGATTCTGGGTAAATGGATGCATGTCATATTTTGAGAAAGTGCCAGATGGTTTTTATCTAATTCATGGGATGGACCCCTATGTATGGTCATTATGCACCAATCTGCAAGAGGATGGCCGTATACCATCATTTGAATCTCTGAAGACAGTTGATTCCAGTGCTGGTTCATCAATTGAAGTAGTTTTGATAGATCGGCATAGTGATGCTAGCTTAAAGGAACTGCAAAACAGGGTGCATCATATTTCTTCTAGTTGTATAACCACAAAAGAGGTTGCAGATCATTTAGCAAAGCTGGTATGCAATCACTTGGGGGGTTCGGTTTCTGAGGGAGAAGATGACTTGGTTTCTTCCTGGAGGGAATGCAGTGATGACTTAAAAGAATGTTTGGGATCTGCTGTGATTCCCTTATGCAGCTTATCTGTTGGCCTTTGCAGACATCGTGCTCTTCTATTCAAAGTGTTAGCTGATTCTATAGATTTGCCCTGTCGAATTGCTAGGGGCTGTAAATATTGCACTAGAGACGATGCTTCATCTTGCCTTGTTAGGTTCGGGCTTGATAGGGAATATCTCATTGATCTGATTGGGAAGCCAGGTTGCTTATGCGAACCTGATTCTTTGCTCAATGGTCCATCATCCATCTCAATTTCTTCACCATTGCGATTTCCAAGACTAAAACCTATTGAATCTACCATTGATTTCAGGTCACTGGCCAAACAGTATTTCTTGGATAGCCAATCACTTAATATTGTATTTGATGAAGCTTCTTCAGGGAATGTTGTACCTGGGAAGGATGCTGCGTTCTCTGTCTATCAAAGGCCATTAAATAGGAAGGATGGGGATGGAAAAAACATAGTGCTTACTGGTGACAGGGACAGAAGTTCTCAGTTATTGAATCCAAAATCTGCCCAACTGAATACTCAAGATGGAAAGTCTGAGCAATTTAGATCATGTATTACTTCTCAATCTACTGTACAGTCTACCCCTTTTGTAGACAACGTAGTCCCTTTAAACCATATCTCACAGATTGGTTCCAGAGATTCTGAGCCTCTCTTAGCATTGTCTCATGTAAGGGTGGATCATGCTAACAATTTATCATTTATTGACGGTAGTCAACTGATTAGAAAACCAAATGAGCTTTCCTTTGGCATAGAAGATTTGGTTATTCCATGGAAAGATCTTGTTTTGAGGGAGAAAATTGGGGCAGGTTCTTTTGGGACTGTATATCATGCTGATTGGCACGGCTCAGATGTTGCTGTGAAGATTCTGATGGAACAAGACCTACATGCAGAACGTTTTGATGAATTTCTTAGGGAGGTTGCCATAATGAAATGTCTACGACACCCGAACATTGTTCTCTTTATGGGTGCAGTCACAGAGCCTCCAAACTTGTCCATTGTCACAGAATACTTATCAAGGGGTAGTTTACACAGGCTTTTGCATAGGCCTGGGGCAAGAGAAGTCTTAGATGAGAGACGACGGTTAAACATGGCATATGATGTTGCAAAGGGAATGAATTATCTTCACAAACGCAACCCCCCAATTGTTCATCGTGATTTGAAATCTCCAAATCTTTTAGTTGATAAGAAGTACACAGTAAAGGTTTGTGATTTTGGGCTTTCACGTTTAAAGGCACACACGTTTCTTTCGTCAAAATCAGCTGCCGGGACTCCTGAGTGGATGGCACCAGAAGTTCTCCGTGATGAGCCATCAAATGAGAAATCGGATGTTTATAGCTTTGGTGTGATTCTGTGGGAGCTTGCTACATTGCAGCAACCATGGGGCAACTTGAACCCAGCGCAGGTTGTGGCAGCCGTAGGTTTCAAAGGCAAAAGGCTTGAGATCCCACGTGATTTAAATCCTCAAGTTGCTACTATTATAGAGGCTTGCTTTGCCAGTGAGCCCTGGAAACGTCCTTCCTTTTATGAAATAATGGAATCGTTGAAGCCATTGATCAAACCTGCTACGCCTCATCAAATTCGCTCAAATATGTCATTAATAGATTCAGATTCATTCATGTATATTAATTTCTTCGCTGAAAGTGCCTCCATTTTTGAGCTTGGGAGGCAAACCCTTCCCACTACTTTGACATCTTTTGGCGACTGGGAACAGATCAAGCGCTAA 2670 43.37 MEMPGRRSDYSLLSQIPDEEVGTGASTSFYDSIAAGGNVYKGRTDRVFDWDGSGDHRLNTQANRIGNLYSWIGLQRHSSGSSYDDSSLSSDYYAPTLSNAAANEINALGYINDDEFRVKTLASGGSSGKSWAQQTEESYQLQQALALRLSSEATCADDPNFMDPMPDEAALRSLSSSAEATSHRFWVNGCMSYFEKVPDGFYLIHGMDPYVWSLCTNLQEDGRIPSFESLKTVDSSAGSSIEVVLIDRHSDASLKELQNRVHHISSSCITTKEVADHLAKLVCNHLGGSVSEGEDDLVSSWRECSDDLKECLGSAVIPLCSLSVGLCRHRALLFKVLADSIDLPCRIARGCKYCTRDDASSCLVRFGLDREYLIDLIGKPGCLCEPDSLLNGPSSISISSPLRFPRLKPIESTIDFRSLAKQYFLDSQSLNIVFDEASSGNVVPGKDAAFSVYQRPLNRKDGDGKNIVLTGDRDRSSQLLNPKSAQLNTQDGKSEQFRSCITSQSTVQSTPFVDNVVPLNHISQIGSRDSEPLLALSHVRVDHANNLSFIDGSQLIRKPNELSFGIEDLVIPWKDLVLREKIGAGSFGTVYHADWHGSDVAVKILMEQDLHAERFDEFLREVAIMKCLRHPNIVLFMGAVTEPPNLSIVTEYLSRGSLHRLLHRPGAREVLDERRRLNMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKAHTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKGKRLEIPRDLNPQVATIIEACFASEPWKRPSFYEIMESLKPLIKPATPHQIRSNMSLIDSDSFMYINFFAESASIFELGRQTLPTTLTSFGDWEQIKR 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29424234 29432728 + CrPI670011_04g010720.1 Cre04g1072 495376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1072 889 Gene3D Transferase(Phosphotransferase) domain 1 655 844 - -
Cre04g1072 889 Gene3D Phosphorylase Kinase; domain 1 569 654 - -
Cre04g1072 889 FunFam Serine/threonine-protein kinase isoform 1 567 654 - -
Cre04g1072 889 Pfam Protein tyrosine and serine/threonine kinase 577 830 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1072 889 ProSiteProfiles Protein kinase domain profile. 576 834 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1072 889 PRINTS Tyrosine kinase catalytic domain signature 757 779 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1072 889 PRINTS Tyrosine kinase catalytic domain signature 738 748 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1072 889 PRINTS Tyrosine kinase catalytic domain signature 691 709 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1072 889 PRINTS Tyrosine kinase catalytic domain signature 801 823 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1072 889 PRINTS Tyrosine kinase catalytic domain signature 650 663 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1072 889 ProSitePatterns Serine/Threonine protein kinases active-site signature. 697 709 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1072 889 SMART serkin_6 576 834 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1072 889 Pfam Ethylene-responsive protein kinase Le-CTR1 178 384 - -
Cre04g1072 889 ProSitePatterns Protein kinases ATP-binding region signature. 582 603 IPR017441 GO:0005524(InterPro)
Cre04g1072 889 PANTHER SERINE-THREONINE PROTEIN KINASE 169 833 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cre04g1072 889 FunFam Serine/threonine-protein kinase CTR1 655 840 - -
Cre04g1072 889 CDD STKc_MAP3K-like 582 830 - -
Cre04g1072 889 SUPERFAMILY Protein kinase-like (PK-like) 554 830 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1072 Cre-Chr4:29424234 Cre05g1949 Cre-Chr5:31636477 1.70E-117 dispersed
Cre03g1896 Cre-Chr3:35979254 Cre04g1072 Cre-Chr4:29424234 9.20E-123 transposed
Cre11g1883 Cre-Chr11:30496870 Cre04g1072 Cre-Chr4:29424234 1.00E-174 transposed
Cre10g2049 Cre-Chr10:35190531 Cre04g1072 Cre-Chr4:29424234 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64046 PF07714 PK_Tyr_Ser-Thr 4.50E-69 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1072 K14510 - csv:101208800 1576.99