Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1074 ATGTTTTTCTCCAAAACCAAATCTCTTAATTCTACACCAAACCCTCCTCGTTACCGAGGTGTCCGCCGTCGGAGCTCCGGCAAGTGGGTTTCAGAGATTCGGGAGCCCAGGAAGCCCAATAGGATTTGGTTGGGAACTTTCCCTACCCCGGAAATGGCTGCCATCGCTTATGACGTGGCAGCCCTGGCTGTCAAGGGCCCCAACGCTGACCTCAACTTTCCTAATTTGGCATCTTCCTTACCAGTGCCGGCCTCCACCGCCGCACGTGATATTCAGGCTGCAGCCACGTCTGCTGCAACAGCTATAGGAGCAGCTGCAGCTACAATAGGGTTAGATGGTAATCCTGCGAGTGGGAGTACTAGAGAAAAAGAAGATGAGGAAGGAGATGAAGGAGAGGAATTAGTAGAGGGGGGATTTGTAGATGAAGATATGATATTTGATATGCCAAATATTCTTATGAATATGGCTGAAGGAATGCTTCTCACTCCTCCATCCTTCAACTTCAACATCAATGCTCCAAATGATTATGAATATCCTCCAACCTATACTCAAGATAACCTTTGGGAATTCCCTTAA 576 47.74 MFFSKTKSLNSTPNPPRYRGVRRRSSGKWVSEIREPRKPNRIWLGTFPTPEMAAIAYDVAALAVKGPNADLNFPNLASSLPVPASTAARDIQAAATSAATAIGAAAATIGLDGNPASGSTREKEDEEGDEGEELVEGGFVDEDMIFDMPNILMNMAEGMLLTPPSFNFNINAPNDYEYPPTYTQDNLWEFP 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29446018 29446593 - CrPI670011_04g010740.1 Cre04g1074 495378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1074 191 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1074 191 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1074 191 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1074 191 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1074 191 MobiDBLite consensus disorder prediction 1 31 - -
Cre04g1074 191 MobiDBLite consensus disorder prediction 1 15 - -
Cre04g1074 191 FunFam Ethylene-responsive transcription factor 2 17 75 - -
Cre04g1074 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 153 IPR051032 -
Cre04g1074 191 SMART rav1_2 17 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1074 191 MobiDBLite consensus disorder prediction 110 137 - -
Cre04g1074 191 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677(InterPro)
Cre04g1074 191 Pfam AP2 domain 16 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1074 191 CDD AP2 16 76 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1074 Cre-Chr4:29446018 Cre10g2040 Cre-Chr10:35113019 8.60E-43 dispersed
Cre10g0616 Cre-Chr10:5707220 Cre04g1074 Cre-Chr4:29446018 2.90E-34 transposed
Cre10g2039 Cre-Chr10:35103610 Cre04g1074 Cre-Chr4:29446018 4.10E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53436 PF00847 AP2 1.40E-12 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1074 - - - 0.0