Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1079 ATGGGATCTGGTACTTGTGAAATTGTTGAAGCAAGGGAAGAAATAAAACCTGTTCAAAGTAAGGCAGGATCTCGTCATTCAGATTTTGTATCAGACAAAGATCGAAGACTTTCTGCATTGAAAATTGGATTCAAGGGATCTCTAGAGGATGATATCAATCAGCTTTTTGAGTCAATTAGTATTAAAAATGCATCCAAGAGTTTAGGTCATTCGCAAGTTGAGGTAAATGCACTGAGAAAAAGTACACTTAAGAAGCCAATAACTGTTGGCATACCTCGGTCACCAGGTATTGGTACTTCTGATTCTGGTAGTCTGAAGCAAGCACTTAGGGAACTATGCCTTTCAAAGGCGTCTGAAATGGCTGCTATGAAGAGATCATCAAAATCATCCAGCTCTTCAAGAATCTCAGAAGCTGGGCGGATCAAGACATTGTATAATTCAGTTATGGTTGAAGCCACTGAGTCAGGCTCTTCTTCAGATAAGGGGGGACGTGTGGTTGAAATTTCCCTGGTTCCAGAGGAAAAGAAATTGAACTTTGAGAAGAGACTTGAGCATGTCCAGGCATCTGCTGTTAAATCACTGGTTGAAAGTGCTCATTCTTCTCAGTTGCCCGCTGCGAAAACAAAAAAATATGTTGAGGTTGCTACTGTGGAACAAAACGTCAATACCACTTTGTCAAGGAAAGTTGGATCTCAAACATTAAAGGCAGAGCTGGAGAAGGAAGAAGAGTCCATTACTCCACCATCTATATCTTCTTGCACTATTGGCAAGGTCTTAGAGAAGGAGAAGAAAATTCTTGCCGGAAGCAGGGTAGCAAATAAAGTGGCATCATCTAAGGCAGGACGGAAAGGTAGGTTGCAAACTGCATCTTCATCTAAGTTGGGTAGTGGCAGTAAGGTAACCAAGTTATCTAGAAGTGCGTCCCGTTCTGTTAAACCAGTTATTAGAAACAAGGGGCTGGCTAAGAAGAAAGTCAAACAGGATTTGAGTTCTCCAACATGTAGTTCAAGCACATACAATGCAGTCAATGGTGATACGGATCCTAGTAAAAGGAAGTTGATATGTGAGAGGTGCCACTGTGCAATGAATAGTGCAGCTAAAGACTCAAAGAAGGGCGCTGCATCCCAGTTTAGTGGTCTTTGTCCTGATGTAAACATGACCAATTCAAAATCTGGTGTTAGCAAATCAGGCTTCAATGTGGATGGCAAGGCTTCTGATGTTAAAGTAAAAAGAAATACAAGGGTGCGGGATAAGGGTGAATTTTCTCAAAGCTCAAAAAGTAGTCAAGGTGAGTACAGTAGCAGTACGACGAGTATTATAAGTGACGATAGCAATGGGCACGGACCCAGTAATGGTAACAGACCTCATATGTCAAAAGATGTTAGGTGGGAAGCCATACGCCATGCACAATTGCAGTATGGGGTCCTCAGCTTGCGGCATTTTAATCTTTTAAAGAAGCTTGGTTGTGGGGACATTGGAACAGTGTATCTTGCTGAGCTAACCGGCACTAATTGCCTATTTGCCATTAAGGTCATGGATAATGAGTTTCTAGCAAGACGGAAGAAAATGCCTAGAGCGCAAACTGAGAGAGAAATACTGAGAATGCTAGATCATCCATTCCTCCCTACACTTTATGTTCAATTTACTTCAGATAATCTATCATGTCTCGTCATGGAGTATTGTCCTGGAGGAGATCTTCATGTTCTGCGGCAGAAGCAGCTAGGCAGAGTTTTTCCTGAACCCGCAGCAAGATTTTATGTTGCTGAGGTCCTCCTTGCTTTGGAGTACTTGCACATGCTTGGAGTTATTTATCGAGATTTAAAACCTGAGAACATTCTTGTCAGGGAAGATGGTCACATAATGCTTACCGACTTTGACCTGTCGCTTAGGTGCACAGTCAATCCAACACTCTTGAAGTCATCATCCTTCAATGCGGACTTGGTGAAAACATCAGGTCCCTGTACAGATTCTAGTTGTGCTGAGCCATTTTGCATTGAACCATCATGTCAAGTCCCATGCTTCAGCCCCAGGTTTCTACCTGCTGCTGCCAAAACAAGGAAGTCAAAACTTGACCTCACAACACAGTTCAGGTCATTGCCCCAGCTCGTTGCTGAACCCACCGATGCACGTTCGAATTCCTTCGTTGGCACTCATGAGTATTTGGCTCCCGAGATAATTAAAGGAGAGGGACATGGAGCTGCAGTTGATTGGTGGACGTTTGGTGTTTTTCTCTATGAGCTTCTGTATGGTAAAACCCCTTTCAAGGGTTCCAATAATGAAGAAACATTAGCCAATGTAATAATGCAGGGCCTCAGTTTTCCCGACAGCCCAATTGTTAGTTTCCAAGCGAGGGATCTTATCCGAGGACTGTTGGTAAAAGAACCCGAACACCGATTCGGGACAGAGAAAGGGGCTGCAGAGATCAAACAGCACCCGTTCTTCGAGGGGCTAAACTGGGCATTGATCCGGTGTGCAGTTCCTCCAGAACTTCCAGACTTATGTGATATGGACATTACAAGTATGATTGCTCAACAAAACAAGTTCAGCTTTGCTTTGATTTCACAATCTTCTCTTTTTCCCCCCCTCGACTTCAAATTTCTCTCCTCTCAATCTCTTTTAGCCACTCCGATCCGCTGTCTGTTTCTTCGATCTTTCTCCAAATTCTTCCGGATTCTACCATACCCTGTCTTTAATCACTCGCCGACAAGGAAATTTTCCAGAAAAAAATGCCCAAGATTAAGACGAACCGTGTCAAGTATCCGGAGGGATGGGAGCTAA 2778 43.3 MGSGTCEIVEAREEIKPVQSKAGSRHSDFVSDKDRRLSALKIGFKGSLEDDINQLFESISIKNASKSLGHSQVEVNALRKSTLKKPITVGIPRSPGIGTSDSGSLKQALRELCLSKASEMAAMKRSSKSSSSSRISEAGRIKTLYNSVMVEATESGSSSDKGGRVVEISLVPEEKKLNFEKRLEHVQASAVKSLVESAHSSQLPAAKTKKYVEVATVEQNVNTTLSRKVGSQTLKAELEKEEESITPPSISSCTIGKVLEKEKKILAGSRVANKVASSKAGRKGRLQTASSSKLGSGSKVTKLSRSASRSVKPVIRNKGLAKKKVKQDLSSPTCSSSTYNAVNGDTDPSKRKLICERCHCAMNSAAKDSKKGAASQFSGLCPDVNMTNSKSGVSKSGFNVDGKASDVKVKRNTRVRDKGEFSQSSKSSQGEYSSSTTSIISDDSNGHGPSNGNRPHMSKDVRWEAIRHAQLQYGVLSLRHFNLLKKLGCGDIGTVYLAELTGTNCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYVQFTSDNLSCLVMEYCPGGDLHVLRQKQLGRVFPEPAARFYVAEVLLALEYLHMLGVIYRDLKPENILVREDGHIMLTDFDLSLRCTVNPTLLKSSSFNADLVKTSGPCTDSSCAEPFCIEPSCQVPCFSPRFLPAAAKTRKSKLDLTTQFRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGKTPFKGSNNEETLANVIMQGLSFPDSPIVSFQARDLIRGLLVKEPEHRFGTEKGAAEIKQHPFFEGLNWALIRCAVPPELPDLCDMDITSMIAQQNKFSFALISQSSLFPPLDFKFLSSQSLLATPIRCLFLRSFSKFFRILPYPVFNHSPTRKFSRKKCPRLRRTVSSIRRDGS 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29504222 29509527 - CrPI670011_04g010790.1 Cre04g1079 495383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1079 925 MobiDBLite consensus disorder prediction 283 311 - -
Cre04g1079 925 MobiDBLite consensus disorder prediction 271 346 - -
Cre04g1079 925 CDD STKc_phototropin_like 479 835 - -
Cre04g1079 925 MobiDBLite consensus disorder prediction 409 457 - -
Cre04g1079 925 ProSiteProfiles Protein kinase domain profile. 481 814 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1079 925 Pfam Protein kinase domain 482 632 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1079 925 Pfam Protein kinase domain 711 814 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1079 925 MobiDBLite consensus disorder prediction 422 452 - -
Cre04g1079 925 SUPERFAMILY Protein kinase-like (PK-like) 479 881 IPR011009 -
Cre04g1079 925 ProSitePatterns Serine/Threonine protein kinases active-site signature. 602 614 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1079 925 FunFam serine/threonine-protein kinase D6PK-like 709 832 - -
Cre04g1079 925 FunFam Serine/threonine-protein kinase D6PK-like 479 564 - -
Cre04g1079 925 Gene3D Transferase(Phosphotransferase) domain 1 707 832 - -
Cre04g1079 925 FunFam serine/threonine-protein kinase D6PK-like 565 632 - -
Cre04g1079 925 PANTHER FLIPPASE KINASE 1-RELATED 298 839 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cre04g1079 925 MobiDBLite consensus disorder prediction 328 345 - -
Cre04g1079 925 Gene3D Phosphorylase Kinase; domain 1 479 560 - -
Cre04g1079 925 SMART serkin_6 481 814 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1079 925 Gene3D Transferase(Phosphotransferase) domain 1 561 630 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1079 Cre-Chr4:29504222 Cre04g1741 Cre-Chr4:35499566 1.30E-149 dispersed
Cre09g0814 Cre-Chr9:8180469 Cre04g1079 Cre-Chr4:29504222 4.30E-58 transposed
Cre02g2508 Cre-Chr2:38353164 Cre04g1079 Cre-Chr4:29504222 8.00E-197 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64047 PF00069 Pkinase 6.60E-36 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1079 - - - 0.0