Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1091 ATGGCGGAAGAGCACAGATGCCAAGCAGCTGAAGGCCATCGTCTCTGCGCTAATAATTGCGGCTTCTTCGGTAGCCCAGCTACCATGGATCTCTGCTCCAAATGTTACAGAGACTTCCGTCTTAAAGAACAAGAACAAGCCTCCACCAAATCCACCATCGAAGCCGCTCTCTCGGCCTCATCATCTCCTTCTCCTTCCTCTTCCCCAATCGATCCTCCCCCCGTTCCCCCTGTTGTCGCCTTGTCCCCGCCGGACTCCACCACAGATCTGACCATCCCTCCCCTCGCGGCCGTCGGATCTGAGGCCGCAAACCAACCGAATCCTACTCCGAACCCCAACCCCAACCCAAACCGTTGTTCGTCGTGCCGTAAGAAGGTGGGTTTGACCGGGTTCAAATGCAGATGCGGAACCACGTTCTGTGGGGCTCATAGGTACCCGGAGAAACACGGCTGCACCTTCGACTTCAAGTCAATCGGAAGAGAGGAGATCGCTCGAGCGAACCCCGTCGTCAAAGCCGATAAACTGGAAAGGATTTGA 537 55.87 MAEEHRCQAAEGHRLCANNCGFFGSPATMDLCSKCYRDFRLKEQEQASTKSTIEAALSASSSPSPSSSPIDPPPVPPVVALSPPDSTTDLTIPPLAAVGSEAANQPNPTPNPNPNPNRCSSCRKKVGLTGFKCRCGTTFCGAHRYPEKHGCTFDFKSIGREEIARANPVVKADKLERI 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29601845 29602381 + CrPI670011_04g010910.1 Cre04g1091 495395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1091 178 Gene3D - 1 69 - -
Cre04g1091 178 MobiDBLite consensus disorder prediction 46 118 - -
Cre04g1091 178 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 178 IPR050652 -
Cre04g1091 178 Gene3D - 96 174 IPR035896 -
Cre04g1091 178 SUPERFAMILY AN1-like Zinc finger 102 173 IPR035896 -
Cre04g1091 178 MobiDBLite consensus disorder prediction 48 65 - -
Cre04g1091 178 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 58 - -
Cre04g1091 178 SMART A20_3 13 37 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Cre04g1091 178 MobiDBLite consensus disorder prediction 66 81 - -
Cre04g1091 178 ProSiteProfiles Zinc finger AN1-type profile. 113 159 IPR000058 GO:0008270(InterPro)
Cre04g1091 178 FunFam Zinc finger AN1-type containing 6 96 174 - -
Cre04g1091 178 SMART AN1_Zf_4 119 156 IPR000058 GO:0008270(InterPro)
Cre04g1091 178 Pfam AN1-like Zinc finger 119 155 IPR000058 GO:0008270(InterPro)
Cre04g1091 178 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Cre04g1091 178 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2527 Cre-Chr2:38556075 Cre04g1091 Cre-Chr4:29601845 2.00E-40 dispersed
Cre04g1091 Cre-Chr4:29601845 Cre09g0407 Cre-Chr9:3970581 4.00E-34 dispersed
Cre04g1091 Cre-Chr4:29601845 Cre09g2176 Cre-Chr9:40836627 2.40E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1091 - - - 0.0