Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1093 ATGGCGGATTCGCTGAGAAAAACGCCGTCGTTTCCAGCGGCCTTCACTATCGCCGTCGTCGCCTTCGCTTCTCTGTTCTCTGCTGTTTCGTCTTATCACCGCCCGCCACCTCGCCGGAATCTCTTCGTTCCTCGCCGTCAAGATCTCGACTCCGATTCTCCAGAACAGGTACATATATCTCTTGTTGGTGTTGATAAAATGAGGATAACATGGATCACAGAGGACTCTGCACCAGCTATGGTGGAATATGGCACATTCCCTGGAGTTTACAACAAGAATGTAACTGGAACTACTTCCTCATACAAATATGCATTATATGAATCTGGTAATATTCATGATGTAACCATTGGTCCTCTCCATCCCAACACCACTTATTACTATCGCTGCAGCTCGAACTCGGCCCGGAACTTCACTTTCAAAACCCCTCCTTCTCAGCTCCCCATCAAATTTGTTGTCATTGGTGATCTTGGGCAGACAGAATGGACCCAAAAAACTCTCGAACATGTAGCGAAATCAGACTATGATGTGCTGCTACTTCCCGGTGACTTGTCGTATGCTGATTTTGTTCAGTCTCTGTGGGACTCGTTCGGCAGGCTCGTCGAGCCACTGGCTAGCCAAAGGCCATGGATGGTGACTCAGGGAAACCATGAAGTAGAGCGCGTCCCAGTGATTCATTCCCAACCTTTCACAGCATACAATGCAAGATGGCACATGCCCTTCGAAGAAAGCTCGTCGAATTCCAACCTTTATTATTCATTTGACACGGCTGGCGTGCACGTCATTATGTTGGGATCTTATACTGATTTTGACAAGAGTTCAGCTCAGTACGAATGGCTCGTAGCAGACTTGAAGAAGATCGAGCGCGCAACAACCCCGTGGATTCTGGTGCTTATTCATGCTCCATGGTATAACTCCAACACTGCTCACCAGGGAGACAGAGAGTCTGTTGACATGAAGGCAGCCATGGAAGATCTGCTCTACCAAGCTCGAGTAGATGTGGTGTTTGCTGGGCATGTCCATGCTTACGAGCGTTTCACTCGTGTTTATAATGGGGAAGCAAACAATTGTGCACCAATACATATCACAATCGGCGATGGGGGCAACCGTGAAGGCCTTGCGAGCAAGTATATCGATCCAAAGCCAATGATTTCGTTATTCAGGCAAGCGAGCTTCGGACATGGTCGGTTGGATGTGGTGAATGCGACACATGCACTCTGGACATGGCACAGGAATGACGACAACGTAGCGGTCGTTGGCGACTCACTCTGGTTTACAAGCCTCTCTTCTGACCCAGCTTGTAGAATATGA 1308 48.55 MADSLRKTPSFPAAFTIAVVAFASLFSAVSSYHRPPPRRNLFVPRRQDLDSDSPEQVHISLVGVDKMRITWITEDSAPAMVEYGTFPGVYNKNVTGTTSSYKYALYESGNIHDVTIGPLHPNTTYYYRCSSNSARNFTFKTPPSQLPIKFVVIGDLGQTEWTQKTLEHVAKSDYDVLLLPGDLSYADFVQSLWDSFGRLVEPLASQRPWMVTQGNHEVERVPVIHSQPFTAYNARWHMPFEESSSNSNLYYSFDTAGVHVIMLGSYTDFDKSSAQYEWLVADLKKIERATTPWILVLIHAPWYNSNTAHQGDRESVDMKAAMEDLLYQARVDVVFAGHVHAYERFTRVYNGEANNCAPIHITIGDGGNREGLASKYIDPKPMISLFRQASFGHGRLDVVNATHALWTWHRNDDNVAVVGDSLWFTSLSSDPACRI 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29613590 29618417 + CrPI670011_04g010930.1 Cre04g1093 495397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1093 435 Pfam Purple acid Phosphatase, N-terminal domain 54 141 IPR015914 GO:0003993(InterPro)|GO:0046872(InterPro)
Cre04g1093 435 CDD MPP_PAPs 147 426 IPR041792 -
Cre04g1093 435 Pfam Calcineurin-like phosphoesterase 148 342 IPR004843 GO:0016787(InterPro)
Cre04g1093 435 Gene3D - 53 144 - -
Cre04g1093 435 Pfam Iron/zinc purple acid phosphatase-like protein C 357 418 IPR025733 -
Cre04g1093 435 SUPERFAMILY Purple acid phosphatase, N-terminal domain 46 143 IPR008963 GO:0003993(InterPro)|GO:0046872(InterPro)
Cre04g1093 435 SUPERFAMILY Metallo-dependent phosphatases 147 415 IPR029052 -
Cre04g1093 435 Gene3D - 145 432 IPR029052 -
Cre04g1093 435 PANTHER ACID PHOSPHATASE RELATED 15 428 IPR039331 GO:0003993(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1093 K22390 - - csv:101212320 779.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1093 Cre-Chr4:29613590 Cre05g1591 Cre-Chr5:24832439 2.00E-143 dispersed
Cre04g1093 Cre-Chr4:29613590 Cre04g1612 Cre-Chr4:34572879 9.00E-80 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1005 . . Bda01g00326 . . . . . . . . Cma07g00857 Car03g01049 . . Cpe10g00278 . . . . . . . . Cla04g00983 Cam04g1023 Cec04g1147 Cco04g1211 Clacu04g1052 Cmu04g1039 Cre04g1093 . . Cone13ag1189 Cone19ag1172 Lsi01g01228 Csa06g02677 Chy08g00933 . . . . . Bpe04g00752 . . . . Cmo03g01151 Cmo07g00889 . . . . . Cpe19g00466 . . . . . . . . . . . . . . . . . Cme08g01204
Vvi17g112 Blo04g00867 . . . . . Bma06g00081 . . . Cma10g00063 . Car10g00050 . . . . Bhi02g00516 . . . . . . Cla06g01740 Cam06g1930 Cec06g1980 Cco06g1984 Clacu06g1886 Cmu06g1828 Cre06g2643 . Cone16ag0269 . . . . . . . . . Bda14g01365 . . Bma03g01255 . . . . . . . . . . . . . . . . . Cla04g00983 Cam04g1023 Cec04g1147 Cco04g1211 Clacu04g1052 Cmu04g1039 Cre04g1093 Lsi06g01639 Csa01g00058 Chy02g02661 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007159 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 0 37