Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1133 ATGCGTGGCGCCTCTCGAGCTCCGAACCGGTCGGAGCCACTGCCTCAGTCCCAAACTGCCCAGATCCTGCCGCCTCTCAAGCGCCACCTTGCTTTTGACTCCGCTAAGCCGCCCTTCGCTCCTCCGGGTCATTATTACCACTTCGCCGGCGGTTCCTCCAATGCTATTGATCAACAACCTGATTCCATCGTTGTTAAACCTCTTAAACCAAAGCAGAAGGGTGTCATGTATAACAATGTGGTTGAATCGAACGATTACAGTCATGATCAGGGATCTTCTCTAAGTTCTGTGCAGACACCTGTGTCTGGAAAAGGAGGAAGGGTGTACAATAAGTCGAAGACTTCAAGGAAAACTACATCTGGGCCTCAAACACCTATCTCAGACACTAGCACTTATTCTCCCCTTACTCCAGCTGGAAACTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATCTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTGAACAAAGCTGCAGAAACTTTGCAGGTGCAGAAAAGGAGAATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATACTGGAAAGGTTTCAATCAACAAATTCCAGGAAATGTGGATAGCGATACTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAGATGATAAGATAAGAGTAATGCAGGAAAGACTGAGGAATCTGAGTGAAGACGAAAATATCCAAAAGTGGCTCTTTGTGACAGAAGAAGACATTAAAAACTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACCTTGGAAGTTCCTGATCCTGATGAAGCTGTTGATTATCCACAGAGAAGATACCGTATAGTTCTTAGGAGTACGATGGGTCCTATTGATGTATATCTTGTCAGTCAATTCGAGGAAAAGTTTGAGGAGATGAATGTGGTTCCGCCACCTAGTAGCTTCCTACATGCTTCCAGTTCAGGATCAAACGAACATCTAGCAACAGAAGCAATCATCGGGGAGAGTAGTAGAAACGAAATTGAACCTCAAGCTCATCTGTCCCAACACAGCAGCAGCTGTGATGTTAATGGTTCCAATGAGTTTCCTGGTGGAATGATGAAGATTATTCCTTCAGATGTCGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACCGATTCAGATATTGCATGGGATCAATCAGATATGGTTCCTCATGACTTTTTAATATCTGATGTCAGTGCTCAAAGGCCAAGACCAGGAAGCCCACATTCAGAGACAGCCGAAGCACCATCTGATGTTAACTTAAGACAGAGATGA 1410 43.05 MRGASRAPNRSEPLPQSQTAQILPPLKRHLAFDSAKPPFAPPGHYYHFAGGSSNAIDQQPDSIVVKPLKPKQKGVMYNNVVESNDYSHDQGSSLSSVQTPVSGKGGRVYNKSKTSRKTTSGPQTPISDTSTYSPLTPAGNCRYDSSLGLLTKKFINLIKQARDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNQQIPGNVDSDTSMLQVDVENLSFEERRLDDKIRVMQERLRNLSEDENIQKWLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVPPPSSFLHASSSGSNEHLATEAIIGESSRNEIEPQAHLSQHSSSCDVNGSNEFPGGMMKIIPSDVDNDADYWLLSDAEVSITDMWRTDSDIAWDQSDMVPHDFLISDVSAQRPRPGSPHSETAEAPSDVNLRQR 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29955121 29961739 - CrPI670011_04g011330.1 Cre04g1133 495437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1133 469 MobiDBLite consensus disorder prediction 1 21 - -
Cre04g1133 469 Gene3D - 136 210 IPR036388 -
Cre04g1133 469 FunFam E2F transcription factor 1 136 209 - -
Cre04g1133 469 Coils Coil 234 254 - -
Cre04g1133 469 MobiDBLite consensus disorder prediction 83 137 - -
Cre04g1133 469 PANTHER TRANSCRIPTION FACTOR E2F 59 422 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Cre04g1133 469 Gene3D - 214 324 - -
Cre04g1133 469 MobiDBLite consensus disorder prediction 443 469 - -
Cre04g1133 469 SMART E2F_TDP_2 142 207 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cre04g1133 469 Pfam E2F transcription factor CC-MB domain 223 323 IPR032198 GO:0046983(InterPro)
Cre04g1133 469 Pfam E2F/DP family winged-helix DNA-binding domain 144 207 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cre04g1133 469 SUPERFAMILY E2F-DP heterodimerization region 221 324 IPR037241 -
Cre04g1133 469 CDD E2F_DD 223 324 IPR032198 GO:0046983(InterPro)
Cre04g1133 469 SUPERFAMILY Winged helix DNA-binding domain 142 205 IPR036390 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1133 Cre-Chr4:29955121 Cre06g2535 Cre-Chr6:32994835 2.40E-09 dispersed
Cre08g1386 Cre-Chr8:26845408 Cre04g1133 Cre-Chr4:29955121 4.10E-58 transposed
Cre02g2545 Cre-Chr2:38685177 Cre04g1133 Cre-Chr4:29955121 4.10E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53441 PF16421 E2F_CC-MB 4.70E-33 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1133 K06620 - csv:101212480 764.222