Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1143 ATGAACGATCTGTTTTCCACCGATTCCTTCCGCCGACAGCAGCACCGCCATGACTCCGTCGAGATTCCCGACAACGCGCCGTCGTCAACGACTATCAATCTCAACAGTTTCTTCGACGACGTGGAGTCCGTGAAGGCGGAATTGACGGAGCTCGAACGCCTGTATCGAAGCCTCCAGAATTCTCACGAACAGAGCAAAACTCTTCACAATTCGAAGGCGATTAAGGATCTTCGATCGCGAATGGAATCGGATGTGACTCTGGCTCTGAAGAAGGCTAGGTTTATCAAGCTCCGGTTGGAGGAACTGGACCGGTCCAATGCCGAGAACCGGAATCTTCCTGGTTGTGGCTATGGCTCCTCCGCCGACCGGTCAAGAACTTCCGTCGTCAATGGATTGAGGAAGAAGCTGTGTGATTCGATGGAGAGTTTCAATAGATTGAGAGAGGAGATTTCGTCGACGTATAAGGAGACGATTGAACGAAGGTATTTCACAATTACAGGGGAAAATCCTGATGAGAAGACGGTTGATTTGTTGATCTCTACAGGCGAAAGCGAAACATTCTTGCAAAAAGCAATACAAAAGCAAGGAAGAGGAAGAGTTTTGGAAACAATCCAAGAGATTCAAGAAAGGCATGACGCAGTGAAAGACATAGAGAGGAATTTGAGAGAGCTGCACCAAGTTTTCATGGACATGGCGGTGCTGGTTCAATCTCAGGGGCAGCAGTTGGACGATATCGAGAGCCAAGTGACTCGAGCCAACTCCGCTGTCAAGCGTGGCACCACGGAGCTACAAACTGCAAGATACTACCAGAAAAACACTCGCAAATGGATCTGCATAGGCGTCATCGTTCTCGCACTCATTCTCTTCATCATTATCATCTCCGTCGTCCTTTCCAAGAAGTAG 903 48.73 MNDLFSTDSFRRQQHRHDSVEIPDNAPSSTTINLNSFFDDVESVKAELTELERLYRSLQNSHEQSKTLHNSKAIKDLRSRMESDVTLALKKARFIKLRLEELDRSNAENRNLPGCGYGSSADRSRTSVVNGLRKKLCDSMESFNRLREEISSTYKETIERRYFTITGENPDEKTVDLLISTGESETFLQKAIQKQGRGRVLETIQEIQERHDAVKDIERNLRELHQVFMDMAVLVQSQGQQLDDIESQVTRANSAVKRGTTELQTARYYQKNTRKWICIGVIVLALILFIIIISVVLSKK 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30039475 30041019 + CrPI670011_04g011430.1 Cre04g1143 495447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1143 300 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 31 161 - -
Cre04g1143 300 SMART tSNARE_6 199 266 IPR000727 -
Cre04g1143 300 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Cre04g1143 300 Pfam Syntaxin 36 239 IPR006011 GO:0016020(InterPro)
Cre04g1143 300 PANTHER SYNTAXIN 36 287 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cre04g1143 300 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cre04g1143 300 CDD SynN 34 191 IPR006011 GO:0016020(InterPro)
Cre04g1143 300 Coils Coil 34 68 - -
Cre04g1143 300 Pfam SNARE domain 241 292 IPR000727 -
Cre04g1143 300 Gene3D - 199 298 - -
Cre04g1143 300 MobiDBLite consensus disorder prediction 1 27 - -
Cre04g1143 300 CDD SNARE_syntaxin1-like 203 265 - -
Cre04g1143 300 FunFam Syntaxin 132 197 297 - -
Cre04g1143 300 Gene3D - 32 164 - -
Cre04g1143 300 SMART SynN_4 29 155 IPR006011 GO:0016020(InterPro)
Cre04g1143 300 SUPERFAMILY t-snare proteins 33 259 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0844 Cre-Chr3:7188615 Cre04g1143 Cre-Chr4:30039475 1.30E-85 dispersed
Cre04g1143 Cre-Chr4:30039475 Cre04g1576 Cre-Chr4:34311166 4.20E-44 dispersed
Cre04g0696 Cre-Chr4:24920787 Cre04g1143 Cre-Chr4:30039475 4.30E-60 transposed
Cre10g1499 Cre-Chr10:28862408 Cre04g1143 Cre-Chr4:30039475 2.70E-70 transposed
Cre10g1939 Cre-Chr10:34055389 Cre04g1143 Cre-Chr4:30039475 8.10E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1143 K08486 - csv:101213199 498.049