Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre04g1144 | ATGAACAACGCCACGGCGGACAGCGGCGGATTTCTTTCCTCAAGCAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCCTTAGGGCTTTTGATTCTCATCACTACAATCCTCTTGGCTTCCTATTACTGTACCAGAAACGGCCTATCCTCCTCCGTCATTCAGAGGACCGCCAATCGCTCTCCACCGCAGGCGGAGGAGGAATTAGAAGCCGTCGTCGTCGAAATCGGACTCGATCAGGAGACGATTACGAGTTATCCGAAATTGCTGTACTCGGAAGCGAAGCTTCAGAAGAACGATTCGACTGCCTCTTGTTGTTCAATCTGTTTGGCCGATTACAAGAACTCGGATGTCCTTCGGCTTTTGCCTGATTGCGGTCATCTCTTTCATCTCAAGTGCGTCGATCCGTGGCTGAGGCTTCATCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAGTTCCATTGGCGAGTCGGCGCGATTGA | 516 | 54.07 | MNNATADSGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSSVIQRTANRSPPQAEEELEAVVVEIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD | 171 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 30044273 | 30044788 | + | CrPI670011_04g011440.1 | Cre04g1144 | 495448 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre04g1144 | 171 | CDD | RING-H2_EL5-like | 105 | 148 | - | - | |
| Cre04g1144 | 171 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 14 | 165 | IPR045899 | - | |
| Cre04g1144 | 171 | FunFam | E3 ubiquitin-protein ligase ATL6 | 66 | 153 | - | - | |
| Cre04g1144 | 171 | SMART | ring_2 | 106 | 147 | IPR001841 | - | |
| Cre04g1144 | 171 | SUPERFAMILY | RING/U-box | 82 | 153 | - | - | |
| Cre04g1144 | 171 | Pfam | Ring finger domain | 105 | 148 | IPR001841 | - | |
| Cre04g1144 | 171 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 63 | 152 | IPR013083 | - | |
| Cre04g1144 | 171 | ProSiteProfiles | Zinc finger RING-type profile. | 106 | 148 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre04g1144 | Cre-Chr4:30044273 | Cre08g1007 | Cre-Chr8:23173289 | 7.20E-25 | dispersed | |
| Cre05g0201 | Cre-Chr5:1968806 | Cre04g1144 | Cre-Chr4:30044273 | 2.60E-28 | transposed | |
| Cre08g0761 | Cre-Chr8:20653497 | Cre04g1144 | Cre-Chr4:30044273 | 3.90E-15 | transposed | |
| Cre10g1934 | Cre-Chr10:33995185 | Cre04g1144 | Cre-Chr4:30044273 | 4.20E-46 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre04g1144 | - | - | - | 0.0 |