Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g1149 | ATGAACAACGGCAGCGCTCGGAAAAGTCGACCAGCGCCGCAGCATCCACCGCCGGCTCCGCCGACCAAGCACCAGGCGCTTTCTCAAGAGGAAGATTTCGTCGACGAAGATGTCTTCCTCGACGAGAATCTTCTCGATGAGGACGCTCTCATCCTCCGCGACATGGAGGAGCGTCAGGCCCTTGCTTCCCGGCTCTCCAAGTGGGCTCGTCCACCTCTTTCCCAGGAATACTTGTCTCAGTCGAAGAGCATCGTGTTTCAGCAATTGGAAATTGATTACGTGATCGGGGAAAGTCACAGAGAACTGTTGCCGAATTTGTCTGGCCCTGCCGCTATTCTTAGAATTTTTGGGGTTACGAGGGAAGGACATAGTGTATGCTGCCACGTTCATGGATTTGAACCATACTTCTATATCAGTTGTCCTCCAGGCATGGGTCCTGATGATATCTCTCTTTTTCACCGAACTCTTGAGGCTAGAATGAAGGAGGTAAATAGGAACAGTAAAGCACCTAACTTTGTGCGTCGCATTGAATTGGTGCAAAAGAGAAGTATTATGTACTACCAGCAGCAGACTTCTCAACCATTTCTTAAAATTGTAGTTGCACTGCCAACAATGGTCACCAGCTGCCGTGGTATTCTTGATAGAGGCATACAAATTGATGGCTTTGGTATGAAAAGCTTCATGACATATGAAAGCAATGTGCTTTTTGCCCTCCGTTTTATGATTGACTGCAATGTTGTTGGTGGAAACTGGATTGAGGTTCCTGTGGGAAAATATAAGAAAACTGTTAGAAATTTATCATATTGCCAATTGGAGTTTGATTGCCTATATTCAGACTTGATTAGCCATGCCCCAGAAGGGGAATTTTCTAAAATGGCTCCATTTCGGATCTTGAGTTTTGATATTGAGTGTGCAGGGCGTAAAGGCCATTTTCCGGAGCCGACCCAGGATCCTGTGATTCAGGTGGCAAACCTAGTTACTTTGCAGGGAGAGAACCAACCATTTATTCGCAATGTCATGACCCTTAACTCTTGCTCTCCTATCGCGGGCGTTGATGTCTTATCATTTGATACAGAACGTGAAGTATTGCTGGCTTGGAGGGATCTAATTCGTGAAGCAGACCCTGATATAATAATTGGATATAACATTTGTAAATTCGATTTGCCATATCTAATCGAGAGAGCTGAGGCACTGAAAATACCAGAATTTCCCATATTGGGTCGCATCAGGAACAGCAAAGTTCGTGTCAAAGATACAACTTTTTCTTCAAGACAGCTTGGAACAAGGGAGAGTAAAGAAATAACGGTGGAAGGAAGAGTTCAATTTGATTTACTTCAGGCTATGCAACGGGATTATAAATTAAGTTCGTACTCGTTGAATTCTGTCTCTTCACATTTCCTTTCTGAACAGAAAGAGGATGTCCACCATTCAATAATATCGGATCTTCAAAATGGTAATGCAGAAACACGGAGACGGCTTGCTGTTTATTGTTTAAAGGATGCGTATCTTCCACAACGGCTTTTAGATAAACTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTAACTGGTGTTCCTATTTCTTTTCTTCTTTCGAGAGGGCAAAGCATCAAGGTACTCTCTCAACTCCTTCGGAAGGCAAAACAGAAAAACCTCGTTATTCCAAATGCTAAACATGCAGGATCTGATCAAGGAACCTATGAGGGTGCTACTGTTTTGGAAGCGAGGGCTGGGTTCTATGAAAAGCCCATTGCTACGCTGGATTTTGCATCTCTATATCCATCCATCATGATGGCATATAATTTATGTTATTGCACTCTGGTTACTCCAGAAGATGCTCGCAAGCTAAACCTGCCCCCTGAACATTTCAACAAAACCCCATCTGGTGAGATATTTGTCAAGCCAGATTTGCAGAAGGGGATACTTCCTGAAATATTAGAAGAACTATTGACTGCTCGGAAAAGAGCAAAGGCAGATTTGAAGGAAGCGAAGGATCCTTTTGAGAAGGCTGTGTTGGATGGTCGACAGCTAGCTCTGAAGATAAGTGCAAATTCTGTGTATGGGTTTACAGGAGCTACTGTTGGTCAGTTGCCATGTATAGAGATATCATCAAGTGTTACAAGCTATGGTCGACAAATGATTGAACACACAAAGAAGCTTGTGGAGGATAAATTTACAACGCTTGGGGGATATGAGCACAATGCTGAGGTAATCTATGGTGATACAGATTCTGTTATGGTACAATTTGGTGTTCCCAGTGTAGAAGCAGCAATGATCTTGGGAAGGGAAGCAGCTGACTATATCAGTGGTACTTTCATAAAACCTATCAAGTTAGAGTTTGAGAAGGTATATTATCCATATCTGTTGATTAGTAAGAAGAGATACGCTGGTTTATTTTGGACTAATCCAAATAAGTTTGACAAGATGGATACCAAAGGCATTGAAACAGTTCGAAGAGATAATTGCTTATTGGTGAAAAACCTTGTAAATGAATGCTTGCACAAAATTCTTATCGATAGAGATGTCCCTGGGGCAGTTCAATATGTGAAGAACACAATTTCAGATCTGCTTATGAACCGTGTGGATTTATCACTCTTGGTTATCACCAAGGGACTAACAAAAACTGGAGATGATTATGAAGTGAAGGCAGCTCATGTTGAACTTGCTGAGCGCATGCGTAAGCGAGATGCTGCCACAGCTCCAAATGTTGGCGATCGAGTACCTTATGTGATCATTAAAGCAGCCAAAGGCGCCAAGGCATATGAGAGGTCAGAGGATCCCATTTATGTTCTAGAGAATAGCATACCAATAGATCCTCAGTACTATCTTGAGAATCAGATTAGCAAGCCTCTTCTACGAATTTTCGAGCCCATCTTGAAAAACGCTAGCAAGGAACTTCTACATGGAAGTCACACGAGATCAATTTTTATTTCTACTCCATCAAACGGTGGCATAATGAAATTTGCTAAGAAACAGCTAACCTGCATTGGCTGCAAGGCTCTACTAAGCAAGGCGGATAAAACTCTCTGCTCACACTGCAAAGGAAGAGAAGCGGAACTTTACTGCAAAGCAGTTGCAAATGTGTCTGATTTGGAGATGGTTTTTGGGAGGCTTTGGACACAGTGCCAAGAATGCCAAGGGTCTCTTCACCAAGATGTCCTCTGTACGAGTCGAGACTGTCCAATATTTTATCGTAGAAAGAAGGCACAAAAAGACATGGCTGAAGCTAAACAGCATTTGGAACGCAATTCATTGTTACATAATTTGTATGAACTCCTTGTTCCTGTCACTGTTGTGATATTGCCGGTTATTCGTTCTTCAGAGCTCGTGGTTTTCTTGCACCATGGTGTAGTTTCTAACTTCTGTTACAATGGTGAATACCACATTTACATGGGGCCATAG | 3405 | 42.61 | MNNGSARKSRPAPQHPPPAPPTKHQALSQEEDFVDEDVFLDENLLDEDALILRDMEERQALASRLSKWARPPLSQEYLSQSKSIVFQQLEIDYVIGESHRELLPNLSGPAAILRIFGVTREGHSVCCHVHGFEPYFYISCPPGMGPDDISLFHRTLEARMKEVNRNSKAPNFVRRIELVQKRSIMYYQQQTSQPFLKIVVALPTMVTSCRGILDRGIQIDGFGMKSFMTYESNVLFALRFMIDCNVVGGNWIEVPVGKYKKTVRNLSYCQLEFDCLYSDLISHAPEGEFSKMAPFRILSFDIECAGRKGHFPEPTQDPVIQVANLVTLQGENQPFIRNVMTLNSCSPIAGVDVLSFDTEREVLLAWRDLIREADPDIIIGYNICKFDLPYLIERAEALKIPEFPILGRIRNSKVRVKDTTFSSRQLGTRESKEITVEGRVQFDLLQAMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKHAGSDQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDARKLNLPPEHFNKTPSGEIFVKPDLQKGILPEILEELLTARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVPSVEAAMILGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLFWTNPNKFDKMDTKGIETVRRDNCLLVKNLVNECLHKILIDRDVPGAVQYVKNTISDLLMNRVDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENSIPIDPQYYLENQISKPLLRIFEPILKNASKELLHGSHTRSIFISTPSNGGIMKFAKKQLTCIGCKALLSKADKTLCSHCKGREAELYCKAVANVSDLEMVFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKQHLERNSLLHNLYELLVPVTVVILPVIRSSELVVFLHHGVVSNFCYNGEYHIYMGP | 1134 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 30073966 | 30092216 | - | CrPI670011_04g011490.1 | Cre04g1149 | 495453 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g1149 | 1134 | Gene3D | Helix hairpin bin | 641 | 693 | - | - | |
Cre04g1149 | 1134 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Cre04g1149 | 1134 | CDD | POLBc_delta | 567 | 960 | - | - | |
Cre04g1149 | 1134 | FunFam | DNA polymerase | 814 | 970 | - | - | |
Cre04g1149 | 1134 | Pfam | DNA polymerase family B, exonuclease domain | 229 | 462 | IPR006133 | - | |
Cre04g1149 | 1134 | PANTHER | DNA POLYMERASE CATALYTIC SUBUNIT | 66 | 1062 | IPR050240 | GO:0003887(PANTHER)|GO:0006261(PANTHER)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008296(PANTHER)|GO:0043625(PANTHER)|GO:0045004(PANTHER) | |
Cre04g1149 | 1134 | FunFam | DNA polymerase | 641 | 693 | - | - | |
Cre04g1149 | 1134 | Pfam | DNA polymerase family B | 526 | 959 | IPR006134 | GO:0000166(InterPro)|GO:0003677(InterPro) | |
Cre04g1149 | 1134 | SUPERFAMILY | DNA/RNA polymerases | 551 | 961 | IPR043502 | - | |
Cre04g1149 | 1134 | FunFam | DNA polymerase | 333 | 567 | - | - | |
Cre04g1149 | 1134 | Gene3D | - | 294 | 512 | IPR036397 | GO:0003676(InterPro) | |
Cre04g1149 | 1134 | SMART | polmehr3 | 293 | 752 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
Cre04g1149 | 1134 | FunFam | DNA polymerase | 90 | 265 | - | - | |
Cre04g1149 | 1134 | Gene3D | DNA Polymerase, chain B, domain 1 | 89 | 266 | - | - | |
Cre04g1149 | 1134 | SUPERFAMILY | Ribonuclease H-like | 110 | 532 | IPR012337 | - | |
Cre04g1149 | 1134 | Gene3D | - | 814 | 969 | IPR042087 | - | |
Cre04g1149 | 1134 | CDD | DNA_polB_delta_exo | 290 | 518 | - | - | |
Cre04g1149 | 1134 | ProSitePatterns | DNA polymerase family B signature. | 740 | 748 | IPR017964 | GO:0000166(InterPro)|GO:0003676(InterPro) | |
Cre04g1149 | 1134 | Gene3D | Palm domain of DNA polymerase | 567 | 797 | IPR023211 | - | |
Cre04g1149 | 1134 | PRINTS | DNA-directed DNA-polymerase family B signature | 677 | 689 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
Cre04g1149 | 1134 | PRINTS | DNA-directed DNA-polymerase family B signature | 585 | 598 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
Cre04g1149 | 1134 | PRINTS | DNA-directed DNA-polymerase family B signature | 738 | 746 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
Cre04g1149 | 1134 | Pfam | C4-type zinc-finger of DNA polymerase delta | 996 | 1067 | IPR025687 | - | |
Cre04g1149 | 1134 | NCBIfam | DNA polymerase (pol2) | 352 | 957 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g1551 | Cre-Chr2:27952676 | Cre04g1149 | Cre-Chr4:30073966 | 2.10E-49 | dispersed | |
Cre02g1879 | Cre-Chr2:32055743 | Cre04g1149 | Cre-Chr4:30073966 | 1.40E-89 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g1149 | K02327 | - | csv:101219332 | 2082.76 |