Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1149 ATGAACAACGGCAGCGCTCGGAAAAGTCGACCAGCGCCGCAGCATCCACCGCCGGCTCCGCCGACCAAGCACCAGGCGCTTTCTCAAGAGGAAGATTTCGTCGACGAAGATGTCTTCCTCGACGAGAATCTTCTCGATGAGGACGCTCTCATCCTCCGCGACATGGAGGAGCGTCAGGCCCTTGCTTCCCGGCTCTCCAAGTGGGCTCGTCCACCTCTTTCCCAGGAATACTTGTCTCAGTCGAAGAGCATCGTGTTTCAGCAATTGGAAATTGATTACGTGATCGGGGAAAGTCACAGAGAACTGTTGCCGAATTTGTCTGGCCCTGCCGCTATTCTTAGAATTTTTGGGGTTACGAGGGAAGGACATAGTGTATGCTGCCACGTTCATGGATTTGAACCATACTTCTATATCAGTTGTCCTCCAGGCATGGGTCCTGATGATATCTCTCTTTTTCACCGAACTCTTGAGGCTAGAATGAAGGAGGTAAATAGGAACAGTAAAGCACCTAACTTTGTGCGTCGCATTGAATTGGTGCAAAAGAGAAGTATTATGTACTACCAGCAGCAGACTTCTCAACCATTTCTTAAAATTGTAGTTGCACTGCCAACAATGGTCACCAGCTGCCGTGGTATTCTTGATAGAGGCATACAAATTGATGGCTTTGGTATGAAAAGCTTCATGACATATGAAAGCAATGTGCTTTTTGCCCTCCGTTTTATGATTGACTGCAATGTTGTTGGTGGAAACTGGATTGAGGTTCCTGTGGGAAAATATAAGAAAACTGTTAGAAATTTATCATATTGCCAATTGGAGTTTGATTGCCTATATTCAGACTTGATTAGCCATGCCCCAGAAGGGGAATTTTCTAAAATGGCTCCATTTCGGATCTTGAGTTTTGATATTGAGTGTGCAGGGCGTAAAGGCCATTTTCCGGAGCCGACCCAGGATCCTGTGATTCAGGTGGCAAACCTAGTTACTTTGCAGGGAGAGAACCAACCATTTATTCGCAATGTCATGACCCTTAACTCTTGCTCTCCTATCGCGGGCGTTGATGTCTTATCATTTGATACAGAACGTGAAGTATTGCTGGCTTGGAGGGATCTAATTCGTGAAGCAGACCCTGATATAATAATTGGATATAACATTTGTAAATTCGATTTGCCATATCTAATCGAGAGAGCTGAGGCACTGAAAATACCAGAATTTCCCATATTGGGTCGCATCAGGAACAGCAAAGTTCGTGTCAAAGATACAACTTTTTCTTCAAGACAGCTTGGAACAAGGGAGAGTAAAGAAATAACGGTGGAAGGAAGAGTTCAATTTGATTTACTTCAGGCTATGCAACGGGATTATAAATTAAGTTCGTACTCGTTGAATTCTGTCTCTTCACATTTCCTTTCTGAACAGAAAGAGGATGTCCACCATTCAATAATATCGGATCTTCAAAATGGTAATGCAGAAACACGGAGACGGCTTGCTGTTTATTGTTTAAAGGATGCGTATCTTCCACAACGGCTTTTAGATAAACTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTAACTGGTGTTCCTATTTCTTTTCTTCTTTCGAGAGGGCAAAGCATCAAGGTACTCTCTCAACTCCTTCGGAAGGCAAAACAGAAAAACCTCGTTATTCCAAATGCTAAACATGCAGGATCTGATCAAGGAACCTATGAGGGTGCTACTGTTTTGGAAGCGAGGGCTGGGTTCTATGAAAAGCCCATTGCTACGCTGGATTTTGCATCTCTATATCCATCCATCATGATGGCATATAATTTATGTTATTGCACTCTGGTTACTCCAGAAGATGCTCGCAAGCTAAACCTGCCCCCTGAACATTTCAACAAAACCCCATCTGGTGAGATATTTGTCAAGCCAGATTTGCAGAAGGGGATACTTCCTGAAATATTAGAAGAACTATTGACTGCTCGGAAAAGAGCAAAGGCAGATTTGAAGGAAGCGAAGGATCCTTTTGAGAAGGCTGTGTTGGATGGTCGACAGCTAGCTCTGAAGATAAGTGCAAATTCTGTGTATGGGTTTACAGGAGCTACTGTTGGTCAGTTGCCATGTATAGAGATATCATCAAGTGTTACAAGCTATGGTCGACAAATGATTGAACACACAAAGAAGCTTGTGGAGGATAAATTTACAACGCTTGGGGGATATGAGCACAATGCTGAGGTAATCTATGGTGATACAGATTCTGTTATGGTACAATTTGGTGTTCCCAGTGTAGAAGCAGCAATGATCTTGGGAAGGGAAGCAGCTGACTATATCAGTGGTACTTTCATAAAACCTATCAAGTTAGAGTTTGAGAAGGTATATTATCCATATCTGTTGATTAGTAAGAAGAGATACGCTGGTTTATTTTGGACTAATCCAAATAAGTTTGACAAGATGGATACCAAAGGCATTGAAACAGTTCGAAGAGATAATTGCTTATTGGTGAAAAACCTTGTAAATGAATGCTTGCACAAAATTCTTATCGATAGAGATGTCCCTGGGGCAGTTCAATATGTGAAGAACACAATTTCAGATCTGCTTATGAACCGTGTGGATTTATCACTCTTGGTTATCACCAAGGGACTAACAAAAACTGGAGATGATTATGAAGTGAAGGCAGCTCATGTTGAACTTGCTGAGCGCATGCGTAAGCGAGATGCTGCCACAGCTCCAAATGTTGGCGATCGAGTACCTTATGTGATCATTAAAGCAGCCAAAGGCGCCAAGGCATATGAGAGGTCAGAGGATCCCATTTATGTTCTAGAGAATAGCATACCAATAGATCCTCAGTACTATCTTGAGAATCAGATTAGCAAGCCTCTTCTACGAATTTTCGAGCCCATCTTGAAAAACGCTAGCAAGGAACTTCTACATGGAAGTCACACGAGATCAATTTTTATTTCTACTCCATCAAACGGTGGCATAATGAAATTTGCTAAGAAACAGCTAACCTGCATTGGCTGCAAGGCTCTACTAAGCAAGGCGGATAAAACTCTCTGCTCACACTGCAAAGGAAGAGAAGCGGAACTTTACTGCAAAGCAGTTGCAAATGTGTCTGATTTGGAGATGGTTTTTGGGAGGCTTTGGACACAGTGCCAAGAATGCCAAGGGTCTCTTCACCAAGATGTCCTCTGTACGAGTCGAGACTGTCCAATATTTTATCGTAGAAAGAAGGCACAAAAAGACATGGCTGAAGCTAAACAGCATTTGGAACGCAATTCATTGTTACATAATTTGTATGAACTCCTTGTTCCTGTCACTGTTGTGATATTGCCGGTTATTCGTTCTTCAGAGCTCGTGGTTTTCTTGCACCATGGTGTAGTTTCTAACTTCTGTTACAATGGTGAATACCACATTTACATGGGGCCATAG 3405 42.61 MNNGSARKSRPAPQHPPPAPPTKHQALSQEEDFVDEDVFLDENLLDEDALILRDMEERQALASRLSKWARPPLSQEYLSQSKSIVFQQLEIDYVIGESHRELLPNLSGPAAILRIFGVTREGHSVCCHVHGFEPYFYISCPPGMGPDDISLFHRTLEARMKEVNRNSKAPNFVRRIELVQKRSIMYYQQQTSQPFLKIVVALPTMVTSCRGILDRGIQIDGFGMKSFMTYESNVLFALRFMIDCNVVGGNWIEVPVGKYKKTVRNLSYCQLEFDCLYSDLISHAPEGEFSKMAPFRILSFDIECAGRKGHFPEPTQDPVIQVANLVTLQGENQPFIRNVMTLNSCSPIAGVDVLSFDTEREVLLAWRDLIREADPDIIIGYNICKFDLPYLIERAEALKIPEFPILGRIRNSKVRVKDTTFSSRQLGTRESKEITVEGRVQFDLLQAMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKHAGSDQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDARKLNLPPEHFNKTPSGEIFVKPDLQKGILPEILEELLTARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVPSVEAAMILGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLFWTNPNKFDKMDTKGIETVRRDNCLLVKNLVNECLHKILIDRDVPGAVQYVKNTISDLLMNRVDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENSIPIDPQYYLENQISKPLLRIFEPILKNASKELLHGSHTRSIFISTPSNGGIMKFAKKQLTCIGCKALLSKADKTLCSHCKGREAELYCKAVANVSDLEMVFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKQHLERNSLLHNLYELLVPVTVVILPVIRSSELVVFLHHGVVSNFCYNGEYHIYMGP 1134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30073966 30092216 - CrPI670011_04g011490.1 Cre04g1149 495453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1149 1134 Gene3D Helix hairpin bin 641 693 - -
Cre04g1149 1134 MobiDBLite consensus disorder prediction 1 31 - -
Cre04g1149 1134 CDD POLBc_delta 567 960 - -
Cre04g1149 1134 FunFam DNA polymerase 814 970 - -
Cre04g1149 1134 Pfam DNA polymerase family B, exonuclease domain 229 462 IPR006133 -
Cre04g1149 1134 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 66 1062 IPR050240 GO:0003887(PANTHER)|GO:0006261(PANTHER)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008296(PANTHER)|GO:0043625(PANTHER)|GO:0045004(PANTHER)
Cre04g1149 1134 FunFam DNA polymerase 641 693 - -
Cre04g1149 1134 Pfam DNA polymerase family B 526 959 IPR006134 GO:0000166(InterPro)|GO:0003677(InterPro)
Cre04g1149 1134 SUPERFAMILY DNA/RNA polymerases 551 961 IPR043502 -
Cre04g1149 1134 FunFam DNA polymerase 333 567 - -
Cre04g1149 1134 Gene3D - 294 512 IPR036397 GO:0003676(InterPro)
Cre04g1149 1134 SMART polmehr3 293 752 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Cre04g1149 1134 FunFam DNA polymerase 90 265 - -
Cre04g1149 1134 Gene3D DNA Polymerase, chain B, domain 1 89 266 - -
Cre04g1149 1134 SUPERFAMILY Ribonuclease H-like 110 532 IPR012337 -
Cre04g1149 1134 Gene3D - 814 969 IPR042087 -
Cre04g1149 1134 CDD DNA_polB_delta_exo 290 518 - -
Cre04g1149 1134 ProSitePatterns DNA polymerase family B signature. 740 748 IPR017964 GO:0000166(InterPro)|GO:0003676(InterPro)
Cre04g1149 1134 Gene3D Palm domain of DNA polymerase 567 797 IPR023211 -
Cre04g1149 1134 PRINTS DNA-directed DNA-polymerase family B signature 677 689 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Cre04g1149 1134 PRINTS DNA-directed DNA-polymerase family B signature 585 598 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Cre04g1149 1134 PRINTS DNA-directed DNA-polymerase family B signature 738 746 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Cre04g1149 1134 Pfam C4-type zinc-finger of DNA polymerase delta 996 1067 IPR025687 -
Cre04g1149 1134 NCBIfam DNA polymerase (pol2) 352 957 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1551 Cre-Chr2:27952676 Cre04g1149 Cre-Chr4:30073966 2.10E-49 dispersed
Cre02g1879 Cre-Chr2:32055743 Cre04g1149 Cre-Chr4:30073966 1.40E-89 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1149 K02327 - csv:101219332 2082.76