Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre04g1170 | ATGGCCACTATGAATTCCAGTGTTCTGGCTTGCAACTACGCCATTTCCGGCGCTGGGTCAGCTGACCTGAACTCCAAACTCACCGCCGTCCCTTCTGTTGCGTCTCCTGGGGTTGTGGGATACAAGTTGCCTGCGATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCCAAGAACGAAGGAAGGAGGACTGCGCTTCTTTACCTTGGAGCCACCCTCTTTGCTGCTGCTGCGGCTGCCTCCAACTCCTCTGCCAATGCTGGAGTCATTGAAGATTACCTTGAGAAGAGTAAAGCTAACAAGGAGTTGAATGACAAGAAAAGATTGGCAACAAGTGGGGCAAACTTTGCAAGGGCATACACTGTTGAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCTAAACAAAAGAAAGTTCCATTTATCTCTGATGATTTGGAATTGGAGTGTGAGGGTAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGA | 516 | 48.64 | MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW | 171 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 30270148 | 30271348 | + | CrPI670011_04g011700.1 | Cre04g1170 | 495474 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre04g1170 | 171 | Pfam | Photosystem I reaction centre subunit N (PSAN or PSI-N) | 43 | 171 | IPR008796 | GO:0009522(InterPro)|GO:0015979(InterPro) | |
| Cre04g1170 | 171 | FunFam | Photosystem I reaction center subunit N | 87 | 171 | - | - | |
| Cre04g1170 | 171 | Gene3D | - | 87 | 171 | IPR044907 | - | |
| Cre04g1170 | 171 | PANTHER | PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC | 1 | 171 | IPR008796 | GO:0009522(InterPro)|GO:0015979(InterPro)|GO:0030093(PANTHER) |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre04g1170 | K02701 | - | csv:101204396 | 307.76 |