Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1180 ATGGACCCCCATCACCTCCCAAACCCCTCTTCTCATCTCCATCACTCCGCCATGGAAGACCACCATATCGACCTTCACCATCATCACCACGCCCCCGACCTCGATTCCATTTGGCCGTCGTTGTTGCCATTCCAACTCCCCGACTCTCACGATCAACAACTCCCCTCCTCTTCCACTCATCTGTTGATAGGCTACGGTACTCCGAGTTCTGGAACAGGTGATGATGAAGAAGAACCGGAAGAAGAGTTAGGTGCTATGAAGGAGATGATGTATAAGATTGCGGCAATGCAACCAGTGGACATCGACCCTTCAACTATCCGAAAGCCTAAGCGACGAAACGTGCGGATTAGTGATGACCCGCAAAGCATCGCGGCTCGTCTCCGACGGGAGAGGATCAGTGAGAAAATCAGAATTCTTCAAAGGCTTGTACCTGGAGGGACCAAGATGGACACAGCTTCAATGTTGGATGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGACAAATTCGGTTGCTGCAGTCAAGTCAGCCGCCGCAACAGCCAACCACCAGCGGTGGAGCCGCCGCTGCCGGCGGAGGATGGCCTTTTCCTTTCCATAAGGCTAATGGTTCAACCTCCTCATCCACTTCCATGGAGACTACTCCTGCCATTACACCATCAGGATGGAAAGTTTGTTTGGCCGACTCTTCTTCCTGGAATTTACACTGA 708 51.69 MDPHHLPNPSSHLHHSAMEDHHIDLHHHHHAPDLDSIWPSLLPFQLPDSHDQQLPSSSTHLLIGYGTPSSGTGDDEEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSQPPQQPTTSGGAAAAGGGWPFPFHKANGSTSSSTSMETTPAITPSGWKVCLADSSSWNLH 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30400511 30402129 - CrPI670011_04g011800.1 Cre04g1180 495484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1180 235 MobiDBLite consensus disorder prediction 48 66 - -
Cre04g1180 235 Gene3D - 119 182 IPR036638 GO:0046983(InterPro)
Cre04g1180 235 FunFam BHLH transcription factor 119 183 - -
Cre04g1180 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 121 175 IPR036638 GO:0046983(InterPro)
Cre04g1180 235 MobiDBLite consensus disorder prediction 200 216 - -
Cre04g1180 235 Pfam Helix-loop-helix DNA-binding domain 125 166 IPR011598 GO:0046983(InterPro)
Cre04g1180 235 SMART finulus 122 171 IPR011598 GO:0046983(InterPro)
Cre04g1180 235 MobiDBLite consensus disorder prediction 174 216 - -
Cre04g1180 235 CDD bHLH_AtIND_like 117 174 - -
Cre04g1180 235 MobiDBLite consensus disorder prediction 48 81 - -
Cre04g1180 235 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 8 208 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1180 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 165 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0499 Cre-Chr2:2140026 Cre04g1180 Cre-Chr4:30400511 1.20E-09 dispersed
Cre03g1143 Cre-Chr3:11468696 Cre04g1180 Cre-Chr4:30400511 3.40E-09 dispersed
Cre04g1180 Cre-Chr4:30400511 Cre05g2188 Cre-Chr5:33610785 1.50E-33 dispersed
Cre04g1180 Cre-Chr4:30400511 Cre08g1546 Cre-Chr8:28107261 1.50E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53446 PF00010 HLH 1.50E-06 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1180 - - - 0.0