Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1187 ATGGTGAGAGATGACTTATGTATTACAATTCCGAGCGATTTCAGATGTCCGATATCGCTAGACGTGATGAAATCCCCTGTGAGTTTATGTACCGGAGTGACTTACGACCGTTCCAGTATCCAGAAATGGCTTGATAATGGAAACAACACTTGTCCGGCCACCATGCAGGTCCTTCAAACCAAGGAGTTCGTTCCCAATCACAATCTCCACCGCCTCATTCAGATTTGGTCCGATTCCCTTCACCAACGACTCCACTCCCCTGTTTCCGACTCTGCTATCTCCTCCGATCAAGTTCTCCGCCTCGTCAACCGTATGGAAGACGATCAATCACGCGCTGATTCTCTTCCGCGGCTTGTCTCTTTCGCTTCCGAATCGGTGGAGAATCGGAGGCTTCTCTGCGGAATTGACGGACTCTTGCCGGTACTCGTCGATCTTCTTGGCAATGTCGATGGCGGCGTTTTGGTTGAGCAAACGGTGAGGTTGTTGCATTTGATTCGGAGTGAAATAGAGGATAAGGAGCGGTTTGTGAAGACGATGTTGAAGATGGATCGTAATTGTATTTCGTCTCTGCTTCTGATTCTGCGGAAAGGTACCGTCGAATTGAAAATCTGTTCCGCTAATCTGTTGGAGTATCTCGCCATCGATGCGGAAGCGAAGATTAGAATTGCCGAAACGGATGGATTGATGCAAGAATTACTGAAATTAATCAACTCAGAGAACGATACAACCCTGATCGAATCCGTTCTATCATGCCTAATTTCAATTTCAATGCCGAAACGGATCAAAATCAAATTAGTTCAGCTGGGAGTGATAAAATCGGTAACGAAGCTTCTCTCGGAATCGAACTCGAGTTCAAGCATTTCGATGACGGAGAAGGTTCTAAAAGTACTGGAAACGGCATCGACGGTGAGAGAAGGGAGGACAGAGATCGGAGAGGACTCGGTGTGCGTGGCGGCGATAGTACAGAAGGTGCTGAAGGTATCGAACACGGCGACGGAGCACGCAGTGACGACGCTGTGGAGCGTTTGTTATCTGTTCAGAGACGAGAAGGCGGCGGAAGCGTTGACGAAGGCGAACGGATTGACGAAGATTTTGCTGTTAATGCAGAGCAATTGTTCGGCGCCGGTGAGGCAGATGGCGAGAGATCTGTTGAAGATTTTTCGGATCAATTCAAAATCGTGCCTATCGAGTTACGATACAAAAACTACGCATATCATGCCCTGTTAA 1227 47.84 MVRDDLCITIPSDFRCPISLDVMKSPVSLCTGVTYDRSSIQKWLDNGNNTCPATMQVLQTKEFVPNHNLHRLIQIWSDSLHQRLHSPVSDSAISSDQVLRLVNRMEDDQSRADSLPRLVSFASESVENRRLLCGIDGLLPVLVDLLGNVDGGVLVEQTVRLLHLIRSEIEDKERFVKTMLKMDRNCISSLLLILRKGTVELKICSANLLEYLAIDAEAKIRIAETDGLMQELLKLINSENDTTLIESVLSCLISISMPKRIKIKLVQLGVIKSVTKLLSESNSSSSISMTEKVLKVLETASTVREGRTEIGEDSVCVAAIVQKVLKVSNTATEHAVTTLWSVCYLFRDEKAAEALTKANGLTKILLLMQSNCSAPVRQMARDLLKIFRINSKSCLSSYDTKTTHIMPC 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30496225 30497451 - CrPI670011_04g011870.1 Cre04g1187 495491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1187 408 Pfam U-box domain 10 78 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre04g1187 408 SUPERFAMILY RING/U-box 6 78 - -
Cre04g1187 408 Gene3D - 118 388 IPR011989 -
Cre04g1187 408 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Cre04g1187 408 SUPERFAMILY ARM repeat 163 394 IPR016024 -
Cre04g1187 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 92 IPR013083 -
Cre04g1187 408 CDD RING-Ubox_PUB 11 63 IPR045210 -
Cre04g1187 408 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre04g1187 408 PANTHER WDSAM1 PROTEIN 7 407 IPR045185 GO:0061630(InterPro)
Cre04g1187 408 SMART Ubox_2 13 76 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1187 Cre-Chr4:30496225 Cre07g0933 Cre-Chr7:9062299 1.00E-32 dispersed
Cre02g0386 Cre-Chr2:1026971 Cre04g1187 Cre-Chr4:30496225 1.40E-34 transposed
Cre05g2828 Cre-Chr5:38949712 Cre04g1187 Cre-Chr4:30496225 9.90E-29 transposed
Cre08g1608 Cre-Chr8:28552026 Cre04g1187 Cre-Chr4:30496225 4.20E-35 transposed
Cre02g0405 Cre-Chr2:1199953 Cre04g1187 Cre-Chr4:30496225 3.30E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1187 - - - 0.0