Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1188 ATGTGCTTTCAGGCTTACACCGCCCGCTGTTTCCACTCCAATCCTGACCGACAAATACGATCGCCGACCTACATCGGAACTTCGCTCACCGGAATGACCCGAGACGGCGTACAATTTGAAGCGGCGAAACGATCATATCGGAATGCTAAGGCCGAGGGGAGCCGGCACGAGGAAGCCAAATGGGCCAATGTAATCGGCAATATTTTGAAGAACAGAGGAGAATATGTAAAAGCCCTCAAGTGGTTTCGGATTGATTACGATGTGTCGGTTAAGTACTTACCTCAGAAGCATATGCTGGCAACGTGCCAGTCCCTGGGCGAGGTCTATCTTAGGCTCGAACACTTTAAAGATGCTTTAATTTATCAGAAGAAACATTTAGAGCTAGCCAAAAATGCTAATGACCTCGTGGAACAGCAAAGGGCTAACACTCAACTGGGTCGTACATACCATGAGCTATTTTTGAAATCTGACGATGATCATTTTTCAGTAAGAAATGCCAAAAAATATTTCAAGGCTGCCATGGAACTAGCAAAGTTTCTGAAAGATCACCCACCAAAAATTGGATGTTCATTTCTCAAGGAGTATATTGATGCTCATAATAATTTGGGAATGCTTGAAATGGATCTTGATAATTTGGAAGAGGCCAAAAAGTTCTTAACGAAAGGACTAGAGATCTGCGAGGAAGAAGAGGTGGATGAAGATGATGATGGTCGCAGCAGGCTCCATCACAACCTAGGAAGTGTATATATGGAGCTAAGATTGTGGGATCAAGCTAAGAAGCATGTTGAGAAGGACATTATAATCTGTAAGAATATTGGGCATTGCCAAGGAGAGGCTAAAGGATACATTAACCTCGGTGAACTGCATTACAGGGTTCAAAAGTATGATGAAGCAATTCATTGCTATCGGAAGGCTCTTCATTTAGCAAAATCAATGGAAGATGAGGATGCTTTGGCGAGGCAAATTGATCAGAATATCAATACTGTTAAACAAGCTATACAAGTGATGGTTGAACTAAGAAAAGAAGAACAGAATCTTAAGAAGCTAATGAGGGAAATGGTCACTGCTAGAGGCACACCTCGTGAGCGCAAATGTCTACTGCAGCAAAATGCTTCTCTTGATTGCTTAATTGAAAAGTCAAGTACGATCTTTGCATGGATGCAGCATCTTGAATTTGCAAAAAGGAAGAAGAGAGTAGCGAGTGAACTCTGCGACAAGGAAAAGCTGAGTGATTCTTATCTGGCTATTGGGGAATCATATCAAAAACTAAGAAAATTCACAAAATCCATTAAATGGTATGTGAAGAGCTGGGAACTATACAAGTCTATTGGTAATTCAGAGGGACAAGCACTGGCCAAGATTAATATTGGTGATGTTTACGACTGTGATGGTAAGTGGACAGAAGCACTAGATGCATTTGAGGAGAGTTACAGGATTGCTGGTGAGGCTAAACTTCCTTCCGTCCAGCTTTCAGCACTGGAGAACATGCATTATAGCCACATGATACGATTTGATAATGTAGAAGAAGCTAGGCGGTTACAGTCTCAAATTGACCAATTAAAGGAGAAAACGAAAAGTGGCAGTGAGACAAAATTTGTGGCAGAGGAGTGCTGCTCTGAAACTGATACAGAAACAAATGAGGCTCTGTCAGACAGTCCATCTGATGAGTGCTCCTTGTTAGAAACTAGAAAATCTTGTAACAGCAGATTTAATTCTTCAAAATCTTTAGCTGATTTAGAAGAGCCAAATGACGCAGTTACTTTTACTTCACCCCCCAAACGGCATGAAAGGTCACCTAAAATCAAATCAATTGACATGGAAAAATGCAATACTAATTCTAACCCATCTGAAATATCACCTAAAAGTTTGTCTAAGTCAGTTGGTAGCCAACAAACAACCATTGGCCGTAAACGTGTTCGTGTGATTCTCTCTGATGATGAGGGTGAGGATGAAATGATGGATTTCTCAAAATCAAGGCCTCATTTATGCCGGGGAGAGAATTCTGCAACTTCTGATGACAACAAGAATAAACAATACTCAGGAAATCCTGCAGCTGAAATTAAGGAGGGTTCAGCAACTACCAGCAAACATGCAAGCAAGTCTTACGAAGACATTGAAGAAAGCACCGGTTCATATAAATACAAGAGTCGAATCATCGCTGCTCAAAATCATAAAATTTTTGGAACCCCAAATGCTGATGAAAATTTCCCTTCTGATTCTGCTGCTAGTGGCTCAAAATTTGAAGTTGACATCTCTGAAAATCTGTTCCATAAATATAATGCTACCAAGTCAAACCCTTCTGAGCAGGGTGAATGTGTTACATTCAAAGTTGATAATGAGCTGATACATGTAGAGGTTGCTGTATTTAGCGATATGATAAGCATCGAATCTGCGAAGGAAGAACTAGCATGCATGTACTATCTACAACTTCCCTTTGAAAAGAGATCAGAGGGTCTGTTACCTGTGATTCAACATATAAGTCATGATGGGAGAACTCTAGAGACCCTTGAATTTTCAAAAACCTCCGACCATGGGAGGAATCTTTTGTTCGAAGCTGTGGTCAATGGATGGGTTTCAAAACCCTTGATAAAACTCTATATTGACTACTGCAAGGAGTTATCTGAGGCACCTAACATGAAGCTGCTGAAGAAACTGTACAATCTGGAGGCTTCAGATGACGAGATTGCAGTGTCTGATTGTGATTTGCAAGACTTATCTATAAGTCCATTGTTGAATGCGCTGCACACCCAGAAAACTTTTGCCATCTTAGACCTTTCTCACAATTTCTTAGGAAATGGAACGATGGAGAAAATTCAGCAGGTCTTCAAGCAGTCCAGCCAGACACATGACTTAACGTTAGATTTACACTGCAATCGATTTGGTCCAACTGCTTTATTCCAGATTTGTGAATGCCCTATTCTGTTCACTCGATTGGAAGTGCTTAACATATCTGGAAATCGCCTCACTGACGCTTGCGGGTCATACCTGTCAACTATCTTAAAAAATTGCAAAGGTCTTTGGAGCTTGAACATCGAACGATGTTCCATCACATCTAGAACAATTCAGAAGGTTGCTGATGCACTGGAAGTTGGAGCGTCCCTGGAAAAGCTCTATATTGGATACAACAACTCAATCTCTGGAAATGCACTCAGTAGTTTATTTGTTAAGCTCACAGTACTGAATAGGTTTACAAGTCTTAGTCTAAGTGGTTTGAAGTTGAGCAAGCCTGTTATGGAAGGCCTTCTCCAGCTTATTAAATCCTTGGGTTTGTCTGGATTAATGCTTGGGGGCACTGGCATTGGAGATGATGCTGCATTAGGGATAACTGAGTCTTTTAGCGGAAGTGAAGAGCTTGTGAAACTTGACTTAGCTTATTGTGGACTGACATCCAAGTACCTTGTTAAATTCGGTGGCTGCATTTCTATTATACAACGCATTCATGAGCTGAACCTTGCAGGGAATGCTATCATGCAAGAGGGTTGTAATGCAGTATCGTCACTAATAGCTAACCCTCAATGTGGCATTAAAGTCTTGGCTCTCAACAAGTGCCAGCTTGGCCTAGCTGGAGTTGTTCAAATCATTCAGGCCGTAGCAGGTAACCACTGTCTTGAAGAGCTCAATCTTGCTGATAACGTTGATCTCGATAAACATGCTCTGCAATGTAACATAATAGAGAAAGAAAGTAAACAACTTATACAACCATGTCATGACATATCTAAGCCTCATGACCTAACATGTTCAATCAAGGACTTGGACGCTGCTCAACAGAATTTTGAGGAGTTTAACACTGAATACAATCAGCTTGAAGTTGCTGATAGTGAAGAACCAATTAAAGAAACTGCAGCATCTGGTATCAATGATAGTTGTGCAAGTTCATGTGAAAGAAAATCCGCATCTCTTGATTGCCAGTTTATTTTATCACTTTCAACTGCAATTGGGATGGCAAAGACATTGCAATTACTGGATCTTAGCAATAATGGGTTTTCTGCCCAAGAGACGGAAACAATATTCGGTGCATGGTCAACTTCGAGAACTGATTTGCCCCAAAGACATATTAAGGACAACATAAATCCTTCGATGAAGACTGCGGCAAGATGGCGAGGATTGAAGAGGAGGAAGTGTGAAGTTTATTTCTTCAAAGTAGAAAGATCTCCTTTGTTCTATGGAAAAGGGGGGAAAGGGCAAAGTATAGAGAAGCAAAGAGGTGATAGCCAAAGAATGGATGAAGATGGAGAGTAG 4239 41.0 MCFQAYTARCFHSNPDRQIRSPTYIGTSLTGMTRDGVQFEAAKRSYRNAKAEGSRHEEAKWANVIGNILKNRGEYVKALKWFRIDYDVSVKYLPQKHMLATCQSLGEVYLRLEHFKDALIYQKKHLELAKNANDLVEQQRANTQLGRTYHELFLKSDDDHFSVRNAKKYFKAAMELAKFLKDHPPKIGCSFLKEYIDAHNNLGMLEMDLDNLEEAKKFLTKGLEICEEEEVDEDDDGRSRLHHNLGSVYMELRLWDQAKKHVEKDIIICKNIGHCQGEAKGYINLGELHYRVQKYDEAIHCYRKALHLAKSMEDEDALARQIDQNINTVKQAIQVMVELRKEEQNLKKLMREMVTARGTPRERKCLLQQNASLDCLIEKSSTIFAWMQHLEFAKRKKRVASELCDKEKLSDSYLAIGESYQKLRKFTKSIKWYVKSWELYKSIGNSEGQALAKINIGDVYDCDGKWTEALDAFEESYRIAGEAKLPSVQLSALENMHYSHMIRFDNVEEARRLQSQIDQLKEKTKSGSETKFVAEECCSETDTETNEALSDSPSDECSLLETRKSCNSRFNSSKSLADLEEPNDAVTFTSPPKRHERSPKIKSIDMEKCNTNSNPSEISPKSLSKSVGSQQTTIGRKRVRVILSDDEGEDEMMDFSKSRPHLCRGENSATSDDNKNKQYSGNPAAEIKEGSATTSKHASKSYEDIEESTGSYKYKSRIIAAQNHKIFGTPNADENFPSDSAASGSKFEVDISENLFHKYNATKSNPSEQGECVTFKVDNELIHVEVAVFSDMISIESAKEELACMYYLQLPFEKRSEGLLPVIQHISHDGRTLETLEFSKTSDHGRNLLFEAVVNGWVSKPLIKLYIDYCKELSEAPNMKLLKKLYNLEASDDEIAVSDCDLQDLSISPLLNALHTQKTFAILDLSHNFLGNGTMEKIQQVFKQSSQTHDLTLDLHCNRFGPTALFQICECPILFTRLEVLNISGNRLTDACGSYLSTILKNCKGLWSLNIERCSITSRTIQKVADALEVGASLEKLYIGYNNSISGNALSSLFVKLTVLNRFTSLSLSGLKLSKPVMEGLLQLIKSLGLSGLMLGGTGIGDDAALGITESFSGSEELVKLDLAYCGLTSKYLVKFGGCISIIQRIHELNLAGNAIMQEGCNAVSSLIANPQCGIKVLALNKCQLGLAGVVQIIQAVAGNHCLEELNLADNVDLDKHALQCNIIEKESKQLIQPCHDISKPHDLTCSIKDLDAAQQNFEEFNTEYNQLEVADSEEPIKETAASGINDSCASSCERKSASLDCQFILSLSTAIGMAKTLQLLDLSNNGFSAQETETIFGAWSTSRTDLPQRHIKDNINPSMKTAARWRGLKRRKCEVYFFKVERSPLFYGKGGKGQSIEKQRGDSQRMDEDGE 1412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30525411 30541654 - CrPI670011_04g011880.1 Cre04g1188 495492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1188 1412 SUPERFAMILY TPR-like 42 152 IPR011990 GO:0005515(InterPro)
Cre04g1188 1412 PANTHER PROTEIN TONSOKU 32 1356 IPR044227 GO:0005634(PANTHER)|GO:0005634(InterPro)|GO:0006325(InterPro)|GO:0009933(InterPro)|GO:0009933(PANTHER)|GO:0040029(InterPro)|GO:0072423(InterPro)
Cre04g1188 1412 FunFam Protein TONSOKU 33 187 - -
Cre04g1188 1412 FunFam Protein TONSOKU 869 1239 - -
Cre04g1188 1412 MobiDBLite consensus disorder prediction 576 706 - -
Cre04g1188 1412 MobiDBLite consensus disorder prediction 605 637 - -
Cre04g1188 1412 Pfam Tetratricopeptide repeat 240 310 - -
Cre04g1188 1412 Pfam Tetratricopeptide repeat 412 480 - -
Cre04g1188 1412 Coils Coil 329 359 - -
Cre04g1188 1412 ProSiteProfiles TPR repeat profile. 279 312 IPR019734 GO:0005515(InterPro)
Cre04g1188 1412 Coils Coil 1251 1271 - -
Cre04g1188 1412 SUPERFAMILY TPR-like 191 317 IPR011990 GO:0005515(InterPro)
Cre04g1188 1412 SMART tpr_5 410 443 IPR019734 GO:0005515(InterPro)
Cre04g1188 1412 SMART tpr_5 279 312 IPR019734 GO:0005515(InterPro)
Cre04g1188 1412 SMART tpr_5 99 132 IPR019734 GO:0005515(InterPro)
Cre04g1188 1412 SMART tpr_5 450 483 IPR019734 GO:0005515(InterPro)
Cre04g1188 1412 SMART tpr_5 239 272 IPR019734 GO:0005515(InterPro)
Cre04g1188 1412 SMART tpr_5 196 229 IPR019734 GO:0005515(InterPro)
Cre04g1188 1412 SMART tpr_5 59 92 IPR019734 GO:0005515(InterPro)
Cre04g1188 1412 ProSiteProfiles TPR repeat region circular profile. 279 308 - -
Cre04g1188 1412 SMART LRR_RI_2 975 1002 - -
Cre04g1188 1412 SMART LRR_RI_2 1143 1170 - -
Cre04g1188 1412 SMART LRR_RI_2 917 944 - -
Cre04g1188 1412 SMART LRR_RI_2 1172 1199 - -
Cre04g1188 1412 SUPERFAMILY HCP-like 276 479 - -
Cre04g1188 1412 Pfam Tetratricopeptide repeat 197 227 IPR019734 GO:0005515(InterPro)
Cre04g1188 1412 Gene3D Ribonuclease Inhibitor 867 1373 IPR032675 -
Cre04g1188 1412 MobiDBLite consensus disorder prediction 590 604 - -
Cre04g1188 1412 SUPERFAMILY RNI-like 896 1211 - -
Cre04g1188 1412 MobiDBLite consensus disorder prediction 1390 1412 - -
Cre04g1188 1412 Coils Coil 195 229 - -
Cre04g1188 1412 Gene3D Tetratricopeptide repeat domain 366 527 IPR011990 GO:0005515(InterPro)
Cre04g1188 1412 Gene3D Tetratricopeptide repeat domain 32 346 IPR011990 GO:0005515(InterPro)
Cre04g1188 1412 MobiDBLite consensus disorder prediction 639 671 - -
Cre04g1188 1412 MobiDBLite consensus disorder prediction 672 698 - -
Cre04g1188 1412 MobiDBLite consensus disorder prediction 1396 1412 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1188 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1265 Blo04g00969 . . . Bpe15g00397 . . . . . Cma03g01081 . Car03g00971 . Sed10g0490 . Cpe10g00348 Bhi03g01379 Tan03g1329 Cmetu08g0165 . Hepe04g1126 . . Cla01g01530 Cam01g1598 Cec04g1243 Cco04g1312 Clacu01g1623 Cmu01g1509 Cre04g1188 . . . . Lsi01g01135 . . Cme08g01069 . . . Bda14g01059 . . Bma03g01034 . . Cmo03g01070 . . . . . . . . . . . . . . . . . . . . . . Csa06g02797 Chy02g01038 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011042 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 3 1 31