Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1198 ATGAGTCTTCTTTCCAAAGCAGCCTTTGCTTCTGGCATGAATACCTTTGTCTTTGTCTTCTACAGACAAGCTGCTGGAGCTGTTTTTTTCCTTCCTCTTATGTTCTTCTTGAAAAGAAAAGACAGCCCATCTCTTTCTCTTAAAGATTTCTTCAAGATTTTCGCGATTTCGCTAATAGGGATGACTGTTGGATTTAATGCCTATGGTGTGGCTGTTGATTATACATCTGCAAATTTGGGTGCTGCTGCATTTAATTGCCTCCCTGTCACAACATTTCTCTTTGCTGTTTTATTAAGGATGGAGAAAGTAAACTTGAGAACAGTGGCTGGAATGGCAAAGGCTTTTGGAATATTAGTTTGCATTGGAGGAGTGATCACACTTGCATTCTACAAAGGTCCTTATTTGAAGCCACTCATCAACCATCACCTTTTGAAATTTCACAAGTCCCATGCCCATCAAACTCATTCCTATTCTTCTAAGACTTGGATTATTGGTTGCTTTCTTCTCTTCGTCTCCAGTATCTCTTGGGGTTTGTGGTTTGTTCTCCAGGCTCATTTTCTCAAGACTTATCCATCACCACTGGAGTTTGTAAGTTACCAAACACTCTTAAGCACAGTCCAATCTTTTGTGATAGCTATTGCAATGGAAAGAGATCCTTCTGAGTGGAAGTTGGGTTGGAACATTAGGCTTCTTGCGGTTCTTTACTGTGGAGTTCTTGTAACTGTTGTTTCAAATATATTACAATGTTGGGTAATCAAAGAGAAGGGGCCAGTTTTTCAAGCCATGACAACGCCATTGAATGTGATTGCTACTATTATTGGCTCTGAATTGCTATTGGGTGAAGGAATCAACTTGGGAAGTCTCATTGGTGCAATTTTGTTGGTGCTTAGCCTTTACAGTGTATTATGGGGGAAAAGCAAAGAGCTAAGCATTATTGATAGAGATAACAATAATCAAACAGATGTATTTGTTCCACCTCAGTTACCAAAAGATTTGACAGAAATGAGATCACCTGCTGAGCCATAG 1026 39.57 MSLLSKAAFASGMNTFVFVFYRQAAGAVFFLPLMFFLKRKDSPSLSLKDFFKIFAISLIGMTVGFNAYGVAVDYTSANLGAAAFNCLPVTTFLFAVLLRMEKVNLRTVAGMAKAFGILVCIGGVITLAFYKGPYLKPLINHHLLKFHKSHAHQTHSYSSKTWIIGCFLLFVSSISWGLWFVLQAHFLKTYPSPLEFVSYQTLLSTVQSFVIAIAMERDPSEWKLGWNIRLLAVLYCGVLVTVVSNILQCWVIKEKGPVFQAMTTPLNVIATIIGSELLLGEGINLGSLIGAILLVLSLYSVLWGKSKELSIIDRDNNNQTDVFVPPQLPKDLTEMRSPAEP 341
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 30630917 30635174 - CrPI670011_04g011980.1 Cre04g1198 495502
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1198 341 SUPERFAMILY Multidrug resistance efflux transporter EmrE 21 128 - -
Cre04g1198 341 Pfam EamA-like transporter family 164 302 IPR000620 GO:0016020(InterPro)
Cre04g1198 341 Pfam EamA-like transporter family 10 121 IPR000620 GO:0016020(InterPro)
Cre04g1198 341 SUPERFAMILY Multidrug resistance efflux transporter EmrE 203 306 - -
Cre04g1198 341 PANTHER WAT1-RELATED PROTEIN 1 314 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0415 Cre-Chr2:1310560 Cre04g1198 Cre-Chr4:30630917 4.00E-83 dispersed
Cre02g0416 Cre-Chr2:1321769 Cre04g1198 Cre-Chr4:30630917 2.40E-89 dispersed
Cre04g1198 Cre-Chr4:30630917 Cre04g1200 Cre-Chr4:30668474 3.70E-113 dispersed
Cre04g1195 Cre-Chr4:30604513 Cre04g1198 Cre-Chr4:30630917 3.40E-114 proximal
Cre04g1198 Cre-Chr4:30630917 Cre04g1199 Cre-Chr4:30646996 3.60E-116 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1198 - - - 0.0