Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre04g1198 | ATGAGTCTTCTTTCCAAAGCAGCCTTTGCTTCTGGCATGAATACCTTTGTCTTTGTCTTCTACAGACAAGCTGCTGGAGCTGTTTTTTTCCTTCCTCTTATGTTCTTCTTGAAAAGAAAAGACAGCCCATCTCTTTCTCTTAAAGATTTCTTCAAGATTTTCGCGATTTCGCTAATAGGGATGACTGTTGGATTTAATGCCTATGGTGTGGCTGTTGATTATACATCTGCAAATTTGGGTGCTGCTGCATTTAATTGCCTCCCTGTCACAACATTTCTCTTTGCTGTTTTATTAAGGATGGAGAAAGTAAACTTGAGAACAGTGGCTGGAATGGCAAAGGCTTTTGGAATATTAGTTTGCATTGGAGGAGTGATCACACTTGCATTCTACAAAGGTCCTTATTTGAAGCCACTCATCAACCATCACCTTTTGAAATTTCACAAGTCCCATGCCCATCAAACTCATTCCTATTCTTCTAAGACTTGGATTATTGGTTGCTTTCTTCTCTTCGTCTCCAGTATCTCTTGGGGTTTGTGGTTTGTTCTCCAGGCTCATTTTCTCAAGACTTATCCATCACCACTGGAGTTTGTAAGTTACCAAACACTCTTAAGCACAGTCCAATCTTTTGTGATAGCTATTGCAATGGAAAGAGATCCTTCTGAGTGGAAGTTGGGTTGGAACATTAGGCTTCTTGCGGTTCTTTACTGTGGAGTTCTTGTAACTGTTGTTTCAAATATATTACAATGTTGGGTAATCAAAGAGAAGGGGCCAGTTTTTCAAGCCATGACAACGCCATTGAATGTGATTGCTACTATTATTGGCTCTGAATTGCTATTGGGTGAAGGAATCAACTTGGGAAGTCTCATTGGTGCAATTTTGTTGGTGCTTAGCCTTTACAGTGTATTATGGGGGAAAAGCAAAGAGCTAAGCATTATTGATAGAGATAACAATAATCAAACAGATGTATTTGTTCCACCTCAGTTACCAAAAGATTTGACAGAAATGAGATCACCTGCTGAGCCATAG | 1026 | 39.57 | MSLLSKAAFASGMNTFVFVFYRQAAGAVFFLPLMFFLKRKDSPSLSLKDFFKIFAISLIGMTVGFNAYGVAVDYTSANLGAAAFNCLPVTTFLFAVLLRMEKVNLRTVAGMAKAFGILVCIGGVITLAFYKGPYLKPLINHHLLKFHKSHAHQTHSYSSKTWIIGCFLLFVSSISWGLWFVLQAHFLKTYPSPLEFVSYQTLLSTVQSFVIAIAMERDPSEWKLGWNIRLLAVLYCGVLVTVVSNILQCWVIKEKGPVFQAMTTPLNVIATIIGSELLLGEGINLGSLIGAILLVLSLYSVLWGKSKELSIIDRDNNNQTDVFVPPQLPKDLTEMRSPAEP | 341 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 30630917 | 30635174 | - | CrPI670011_04g011980.1 | Cre04g1198 | 495502 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre04g1198 | 341 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 21 | 128 | - | - | |
| Cre04g1198 | 341 | Pfam | EamA-like transporter family | 164 | 302 | IPR000620 | GO:0016020(InterPro) | |
| Cre04g1198 | 341 | Pfam | EamA-like transporter family | 10 | 121 | IPR000620 | GO:0016020(InterPro) | |
| Cre04g1198 | 341 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 203 | 306 | - | - | |
| Cre04g1198 | 341 | PANTHER | WAT1-RELATED PROTEIN | 1 | 314 | IPR030184 | GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre02g0415 | Cre-Chr2:1310560 | Cre04g1198 | Cre-Chr4:30630917 | 4.00E-83 | dispersed | |
| Cre02g0416 | Cre-Chr2:1321769 | Cre04g1198 | Cre-Chr4:30630917 | 2.40E-89 | dispersed | |
| Cre04g1198 | Cre-Chr4:30630917 | Cre04g1200 | Cre-Chr4:30668474 | 3.70E-113 | dispersed | |
| Cre04g1195 | Cre-Chr4:30604513 | Cre04g1198 | Cre-Chr4:30630917 | 3.40E-114 | proximal | |
| Cre04g1198 | Cre-Chr4:30630917 | Cre04g1199 | Cre-Chr4:30646996 | 3.60E-116 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre04g1198 | - | - | - | 0.0 |