Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g1217 | ATGATACCCTTTTTCCCATCTTCTTCAAATTCCTTTCTGAGGGTCTTTTTCTTCTTTTTCTCTCTTACTCTTCTCTCCTTCTCTGCCTCTTCTGTTACTCCCTCTTCTTCTTCTCATGGAGACACCCAGAAACTCGTTTCCTTCAAATCTTCACTTCCAAACCCAACCCTTCTTCAGAACTGGCTCTCCAATGCCGACCCATGTTCGTTTTCTGGTATTACTTGTAAGGAAACCAGAGTCTCCGCTATAGACTTGAGCTTCTTGTCTTTGAGCTCTAATTTCAGTCATGTGTTTCCTTTGCTTGCGGCTCTTGACCATTTGGAATCGCTTTCTCTTAAATCCACTAACCTCACTGGCTCCATTTCTTTGCCCTCTGGATTCAAGTGTAGCCCTCTGCTTTCTTCTGTAGATCTGTCTCTCAATGCCTTGTTTGGTTCTGTTTCTGATGTCTCCAACTTGGGGTTTTGCCCCAATGTTAAGTCGCTTAATCTGTCCTTTAACTCTTTTGATTTTCCTCTTAAAGACTCTGCCCCTGGATTGAAGCTTGATTTGCAGGTTCTTGATCTTTCTTCTAACCGGATTGTTGGGTCTAAATTAGTTCCATGGATTTTCTCTGGTGGGTGTGGTAATTTGCAGCACTTGGCATTGAAGGGAAACAAAATCAGCGGCGAGATTAATCTATCATCTTGTAATAAACTCGAGCATTTGGATATCTCTGGCAACAATTTCTCTGTGGGTATTCCGTCCTTAGGTGATTGCTCTGTTTTGGAACATTTTGATATCTCCGGCAATAAGTTTACCGGCGACGTCGGACATGCTCTGTCGTCTTGTCAGCAACTCACCTTTCTGAATCTCTCCAGCAACCAGTTCGGGGGGCCAATCCCTCAGTTTGCATCGTCCAATTTGTGGTTTCTTTCTCTTGCTAACAACGATTTCCAAGGGGAGATTCCTGTAAGTATTGCAGATTTGTGTTCTAGTTTGGTAGAGCTCGATCTTTCTTCTAATAGTTTGATTGGGGCTTTGCCTACGGCTTTGGGGTCTTGTTCTTCGTTGCAAACTTTAGACATTTCGAAAAATAATCTCACTGGTGAACTCCCCATTGCCGTTTTTGCCAAAATGAGTAGTCTCAAGAAACTCTCTGTTTCAGACAACAAGTTTTTTGGGGTTTTGTCAGATTCTCTGTCTCAGCTCGCCATTTTGAATTCTTTGGATCTGAGTTCCAATAACTTTTCTGGGTCGATTCCGGCGGGGCTATGTAAAGACCCCAATAACAACTTGAAAGAACTGTTTCTTCAGAACAATTGGTTAACAGGCCGAATCCCTGCGAGTATTAGTAATTGTTCACAGCTGGTTTCTCTTGATTTGAGCTTCAACTTTCTTAGTGGGACGATCCCTTCCAGCTTGGGATCGCTTTCTAAGCTTAAGAACTTGATTATGTGGTTGAATCAGCTGGAGGGGGAGATTCCATCGGATTTTAGCAACTTTCAAGGGCTCGAGAATCTGATCCTGGATTTCAATGAGCTCACTGGGACCATCCCTTCCGGGTTAAGCAACTGTACCAACTTGAACTGGATTTCATTGTCGAACAACCGGTTGAGCGGAGAGATTCCCGCCTGGATTGGGAGTTTACCAAGCCTTGCCATCCTTAAGCTCAGCAACAACTCGTTCTATGGTAGGATTCCTCGGGAGCTCGGCGATTGTCGGAGCTTGATCTGGCTTGACCTTAATACCAATCTCTTGAATGGAACAATCCCGCCGGAGCTGTTTCGTCAATCGGGTAACATTGCTGTTAACTTTATCACAGGGAAGTCTTATGCTTACATTAAGAATGATGGTAGTAAGCAGTGCCATGGAGCTGGAAATTTGCTTGAGTTTTCTGGAATAAGACAGGAACAAGTGAACAGGATTTCAAGCAAGAGTCCTTGCAATTTCACTAGGGTTTATAAAGGAATGACTCAGCCCACTTTTAACCATAATGGCTCCATGATCTTTCTTGATCTTTCCCACAATATGTTGTCTGGTAGTATTCCCAAGGAGATTGGTTCTACAAACTATCTCTACATTTTGGATTTGGGACATAACAGTCTCTCGGGACCGATTCCGCAGGAGCTCGGCGACTTGACGAAACTTAACATTCTTGATCTCTCAAGCAATGAGCTTGAAGGATCAATTCCATTGTCTTTGACTGGACTTTCCTCCCTCATGGAGATTGATCTGTCCAACAATCATCTCAATGGTTCGATACCCGAATCAGCTCAGTTTGAAACATTCCCGGCATCTGGTTTTGCGAATAATTCTGGCCTCTGTGGGTATCCTCTCCCTCCATGTGTGGTTGATTCAGCAGCAAATGCAAATTCTCAGCATCAAAGATCTCATAGGAAACAGGCATCCCTTGCAGGGAGTGTTGCAATGGGGTTACTCTTCTCCCTCTTCTGTATTTTCGGTCTGATTATCGTCGTTATCGAGATGAGGAAGAGAAGGAAAAAGAAGGATTCTACTCTTGATTCTTATGTTGAGAGTCATTCCCAATCAGGCACAACCACCGCCGTTAACTGGAAGCTAACTGGTGCCCGTGAAGCATTGAGCATCAATCTTGCAACGTTTGAGAAGCCATTAAGAAAGCTTACATTCGCTGATCTTCTCGAAGCTACTAATGGCTTCCACAACGATAGCCTGATTGGTTCGGGGGGTTTCGGTGACGTATATAAGGCTCAATTGAAGGATGGAAGCACTGTAGCCATCAAGAAGCTAATTCATGTCAGTGGTCAGGGTGATCGAGAGTTCACTGCAGAAATGGAAACCATTGGCAAAATCAAACACCGAAACCTGGTACCGCTTTTAGGCTACTGTAAAGTAGGAGAAGAACGGCTTCTGGTATACGAGTACATGAAATATGGAAGCCTGGAAGACGTTTTACACGACCAGAAGAAAGGTGGGATCAAACTGAATTGGGCAGCAAGAAGAAAAATTGCCATTGGAGCTGCAAGGGGACTGGCTTTCCTTCACCACAATTGCATCCCTCACATCATTCATAGGGACATGAAATCAAGCAATGTCTTACTGGATGAGAATTTGGAAGCCAGAGTCTCAGATTTTGGAATGGCAAGACTAATGAGTGCCATGGACACTCATTTGAGTGTCAGCACATTAGCCGGAACACCCGGTTACGTCCCTCCCGAATATTACCAAAGCTTCCGGTGTTCTACAAAAGGCGACGTTTACAGTTACGGCGTCGTTATGCTCGAGCTCTTAACAGGAAAACGACCTACAGACTCTGCAGATTTCGGAGACAACAATCTCGTCGGATGGGTAAAACAACACGCCAAGTTGGACCCAACCGATGTTTTCGATCCTGAACTCATAAAGGAGGATCCAAGCCTCAAGTTAGAGCTTTTAGAACACTTGAAGGTAGCTGTTTCTTGCTTAGACGATAGGTCATGGCGGCGTCCAACCATGATCCAGGTAATGACAATGTTCAAGGAAATCCAAGCGGGGTCGGGGATGGATTCACAATCTACGATCGGAACCGACAACGGAGGATTCAGTGTCGACATGGTAGATATGAGCTTAAAAGAAGTACCAGAGCCAGAAGGCAAGTAA | 3600 | 44.42 | MIPFFPSSSNSFLRVFFFFFSLTLLSFSASSVTPSSSSHGDTQKLVSFKSSLPNPTLLQNWLSNADPCSFSGITCKETRVSAIDLSFLSLSSNFSHVFPLLAALDHLESLSLKSTNLTGSISLPSGFKCSPLLSSVDLSLNALFGSVSDVSNLGFCPNVKSLNLSFNSFDFPLKDSAPGLKLDLQVLDLSSNRIVGSKLVPWIFSGGCGNLQHLALKGNKISGEINLSSCNKLEHLDISGNNFSVGIPSLGDCSVLEHFDISGNKFTGDVGHALSSCQQLTFLNLSSNQFGGPIPQFASSNLWFLSLANNDFQGEIPVSIADLCSSLVELDLSSNSLIGALPTALGSCSSLQTLDISKNNLTGELPIAVFAKMSSLKKLSVSDNKFFGVLSDSLSQLAILNSLDLSSNNFSGSIPAGLCKDPNNNLKELFLQNNWLTGRIPASISNCSQLVSLDLSFNFLSGTIPSSLGSLSKLKNLIMWLNQLEGEIPSDFSNFQGLENLILDFNELTGTIPSGLSNCTNLNWISLSNNRLSGEIPAWIGSLPSLAILKLSNNSFYGRIPRELGDCRSLIWLDLNTNLLNGTIPPELFRQSGNIAVNFITGKSYAYIKNDGSKQCHGAGNLLEFSGIRQEQVNRISSKSPCNFTRVYKGMTQPTFNHNGSMIFLDLSHNMLSGSIPKEIGSTNYLYILDLGHNSLSGPIPQELGDLTKLNILDLSSNELEGSIPLSLTGLSSLMEIDLSNNHLNGSIPESAQFETFPASGFANNSGLCGYPLPPCVVDSAANANSQHQRSHRKQASLAGSVAMGLLFSLFCIFGLIIVVIEMRKRRKKKDSTLDSYVESHSQSGTTTAVNWKLTGAREALSINLATFEKPLRKLTFADLLEATNGFHNDSLIGSGGFGDVYKAQLKDGSTVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDQKKGGIKLNWAARRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVMLELLTGKRPTDSADFGDNNLVGWVKQHAKLDPTDVFDPELIKEDPSLKLELLEHLKVAVSCLDDRSWRRPTMIQVMTMFKEIQAGSGMDSQSTIGTDNGGFSVDMVDMSLKEVPEPEGK | 1199 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 30864674 | 30868273 | + | CrPI670011_04g012170.1 | Cre04g1217 | 495521 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g1217 | 1199 | SUPERFAMILY | RNI-like | 273 | 587 | - | - | |
Cre04g1217 | 1199 | Pfam | Brassinosteroid receptor island domain | 593 | 657 | IPR045381 | - | |
Cre04g1217 | 1199 | SUPERFAMILY | Protein kinase-like (PK-like) | 873 | 1163 | IPR011009 | - | |
Cre04g1217 | 1199 | FunFam | serine/threonine-protein kinase BRI1-like 2 | 848 | 962 | - | - | |
Cre04g1217 | 1199 | FunFam | LRR receptor-like serine/threonine-protein kinase GSO1 | 210 | 422 | - | - | |
Cre04g1217 | 1199 | FunFam | Brassinosteroid LRR receptor kinase | 963 | 1164 | - | - | |
Cre04g1217 | 1199 | SMART | serkin_6 | 887 | 1159 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre04g1217 | 1199 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 654 | 776 | - | - | |
Cre04g1217 | 1199 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 423 | 512 | - | - | |
Cre04g1217 | 1199 | Pfam | Protein kinase domain | 887 | 1156 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre04g1217 | 1199 | Pfam | Leucine Rich Repeat | 450 | 471 | IPR001611 | GO:0005515(InterPro) | |
Cre04g1217 | 1199 | Pfam | Leucine Rich Repeat | 425 | 447 | IPR001611 | GO:0005515(InterPro) | |
Cre04g1217 | 1199 | Pfam | Leucine Rich Repeat | 326 | 348 | IPR001611 | GO:0005515(InterPro) | |
Cre04g1217 | 1199 | Pfam | Leucine Rich Repeat | 664 | 682 | IPR001611 | GO:0005515(InterPro) | |
Cre04g1217 | 1199 | Pfam | Leucine Rich Repeat | 279 | 296 | IPR001611 | GO:0005515(InterPro) | |
Cre04g1217 | 1199 | Pfam | Leucine Rich Repeat | 232 | 250 | IPR001611 | GO:0005515(InterPro) | |
Cre04g1217 | 1199 | SMART | LRR_typ_2 | 349 | 372 | IPR003591 | - | |
Cre04g1217 | 1199 | SMART | LRR_typ_2 | 568 | 591 | IPR003591 | - | |
Cre04g1217 | 1199 | SMART | LRR_typ_2 | 184 | 206 | IPR003591 | - | |
Cre04g1217 | 1199 | SMART | LRR_typ_2 | 324 | 348 | IPR003591 | - | |
Cre04g1217 | 1199 | SMART | LRR_typ_2 | 543 | 567 | IPR003591 | - | |
Cre04g1217 | 1199 | SMART | LRR_typ_2 | 373 | 396 | IPR003591 | - | |
Cre04g1217 | 1199 | SMART | LRR_typ_2 | 397 | 421 | IPR003591 | - | |
Cre04g1217 | 1199 | SMART | LRR_typ_2 | 707 | 730 | IPR003591 | - | |
Cre04g1217 | 1199 | SMART | LRR_typ_2 | 495 | 519 | IPR003591 | - | |
Cre04g1217 | 1199 | SMART | LRR_typ_2 | 731 | 754 | IPR003591 | - | |
Cre04g1217 | 1199 | PRINTS | Leucine-rich repeat signature | 707 | 720 | - | - | |
Cre04g1217 | 1199 | PRINTS | Leucine-rich repeat signature | 351 | 364 | - | - | |
Cre04g1217 | 1199 | CDD | STKc_IRAK | 893 | 1162 | - | - | |
Cre04g1217 | 1199 | Pfam | Leucine rich repeat N-terminal domain | 40 | 75 | IPR013210 | - | |
Cre04g1217 | 1199 | ProSiteProfiles | Protein kinase domain profile. | 887 | 1162 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre04g1217 | 1199 | FunFam | Leucine-rich repeat receptor protein kinase EMS1 | 513 | 603 | - | - | |
Cre04g1217 | 1199 | FunFam | Serine/threonine-protein kinase BRI1-like 1 | 600 | 657 | - | - | |
Cre04g1217 | 1199 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 1009 | 1021 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre04g1217 | 1199 | SUPERFAMILY | L domain-like | 38 | 297 | - | - | |
Cre04g1217 | 1199 | Gene3D | - | 598 | 658 | - | - | |
Cre04g1217 | 1199 | Gene3D | Ribonuclease Inhibitor | 45 | 776 | IPR032675 | - | |
Cre04g1217 | 1199 | ProSitePatterns | Protein kinases ATP-binding region signature. | 893 | 916 | IPR017441 | GO:0005524(InterPro) | |
Cre04g1217 | 1199 | PANTHER | RECEPTOR-LIKE PROTEIN 55 | 48 | 267 | - | - | |
Cre04g1217 | 1199 | SUPERFAMILY | L domain-like | 653 | 772 | - | - | |
Cre04g1217 | 1199 | Pfam | Leucine rich repeat | 497 | 555 | IPR001611 | GO:0005515(InterPro) | |
Cre04g1217 | 1199 | Pfam | Leucine rich repeat | 686 | 744 | IPR001611 | GO:0005515(InterPro) | |
Cre04g1217 | 1199 | Pfam | Leucine rich repeat | 350 | 410 | IPR001611 | GO:0005515(InterPro) | |
Cre04g1217 | 1199 | Gene3D | Phosphorylase Kinase; domain 1 | 848 | 962 | - | - | |
Cre04g1217 | 1199 | Gene3D | Transferase(Phosphotransferase) domain 1 | 963 | 1164 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre03g0961 | Cre-Chr3:8461976 | Cre04g1217 | Cre-Chr4:30864674 | 3.10E-42 | dispersed | |
Cre04g1217 | Cre-Chr4:30864674 | Cre09g1847 | Cre-Chr9:36870325 | 1.20E-147 | dispersed | |
Cre04g1217 | Cre-Chr4:30864674 | Cre05g0980 | Cre-Chr5:9047551 | 1.70E-91 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64051 | PF00069 | Pkinase | 4.20E-45 | CL0016 | Cre | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g1217 | K13415 | - | csv:101209118 | 2259.95 |