Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1218 ATGAGGTCATCGGCGTCGGAAGAAGAGATAATGGTGAGTCTATTCCAAGCAGATGAAGAGGCGGCCGCCGTGAACGCTGCCGCTATAACCACCAATTTCATATCTTTTCCCGAAGCCAACAACAACAACAACAATAATAATAACGTTGTTGTTCAACAATCCTTGAAACCCTTTTCCTTCAGTACTCAACAATATTTCTGTCAACAACAACAACAATCCCTTTTCCCTTTTTTCTTCCCTTCAACCACTGCTCCCTCTAATCTCCTTTCCTCTCACAACACACCCTCTCCTTCCTCTCTCTGGGATGAAAGGGAGAGGTTTATGAGAGGGAGAAATAATGGGATTGGAAATTATATTGGTGACGACGATGACGACGATGACTGTAAGCCGCGGTTGAGGGTGTCGACGATGAAGATGAAGAGGATAAAAGGGAGGAAGAAAGTGAGAGAGCCAAGATTCAGCTTCAAGACCATGACGGATGTGGATGTTCTTGACGATGGTTACAAATGGAGAAAGTACGGCCAAAAAGTTGTGAAGAACACCCTCCATCCAAGAAGTTACTATCGTTGCACCGAAGAGAATTGTAAGGTAAAGAAACGAGTTGAGAGATTAGCCGATGATCCAAGAATGGTGATAACAACTTATGAAGGAAGACATGCTCATTCACCTTCAGATCATAATTTAGAAGACTCTATCATGGGTCACTTACCCTCCTCCCACCTCAGTAATTTCCTCTGCTAG 741 43.72 MRSSASEEEIMVSLFQADEEAAAVNAAAITTNFISFPEANNNNNNNNNVVVQQSLKPFSFSTQQYFCQQQQQSLFPFFFPSTTAPSNLLSSHNTPSPSSLWDERERFMRGRNNGIGNYIGDDDDDDDCKPRLRVSTMKMKRIKGRKKVREPRFSFKTMTDVDVLDDGYKWRKYGQKVVKNTLHPRSYYRCTEENCKVKKRVERLADDPRMVITTYEGRHAHSPSDHNLEDSIMGHLPSSHLSNFLC 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30885401 30887794 - CrPI670011_04g012180.1 Cre04g1218 495522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1218 246 FunFam WRKY transcription factor 57 150 224 - -
Cre04g1218 246 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 43 225 IPR044810 GO:0003700(InterPro)
Cre04g1218 246 SUPERFAMILY WRKY DNA-binding domain 156 223 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g1218 246 ProSiteProfiles WRKY domain profile. 159 224 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g1218 246 Gene3D WRKY domain 139 224 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g1218 246 Pfam WRKY DNA -binding domain 165 221 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g1218 246 SMART WRKY_cls 164 223 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0437 Cre-Chr2:1591036 Cre04g1218 Cre-Chr4:30885401 2.20E-46 dispersed
Cre04g1218 Cre-Chr4:30885401 Cre05g0068 Cre-Chr5:893718 1.20E-31 dispersed
Cre04g1218 Cre-Chr4:30885401 Cre04g1225 Cre-Chr4:30981811 2.70E-20 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53451 PF03106 WRKY 4.40E-25 CL0274 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1218 - - - 0.0