Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1247 ATGGTAAGATTCATCTTCCTCCTTGCAAACCCTTCTCCTTCTCACAGTGATTATAGCTGCTGTTTAATTAGAATGGCGAATGAGTTTGGTGAATCAACAAGTGTGCCACATCAAAACCCATCTTGGTCTGCTAATAGTGAAACTACTAACAATGATACTGGTGATTTTGAATGCAATATTTGCTTTGAGTTAGCTCAAGACCCAATTATCACTCTTTGTGGTCATCTCTTTTGCTGGCCTTGTTTATATAGATGGCTGCATCATCACTCACAATGTCAAGAATGCCCTGTTTGTAAGGCTCTTATTCAGGAGGAAAAATTGGTTCCTCTTTATGGTAGGGGTAAAATTCCATCTGATCCAAGATTAAATAGATATCCTGGTATTGATATTCCAAGTCGTCCTGCTGGGCAAAGACCTCAAACAGCACCACCCCCTGTTCCTAATGACTTTGCAAATTATGGTTTTGGATTCACTGGTGGCTTTATGCCAATGGCAACAGCAAGGATTGGCAATTTCACTTTAGCTACTGCTTTTGGTGGTTTGATCCCATCTTTATTCAACATCCAGTTTCATGGATTTCCTGATGCTACTATTTATGGAACTACTTCTGCTTACCCTTATGCATTCAACGCCTTTCATGGAGGTCATGGTCACCATTTTCCGCAACCGTCGACTCGAGGTCAGCATGCTGATAATGTACTGAAAAACCTCCTTTTACTCGTTGGTGTCTTTGTAATTCTTGCCTTGCTCTGGTGGTAA 759 40.97 MVRFIFLLANPSPSHSDYSCCLIRMANEFGESTSVPHQNPSWSANSETTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPSRPAGQRPQTAPPPVPNDFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATIYGTTSAYPYAFNAFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31206173 31207537 + CrPI670011_04g012470.1 Cre04g1247 495551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1247 252 CDD RING-HC_AtRMA-like 56 100 - -
Cre04g1247 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 112 IPR013083 -
Cre04g1247 252 SMART ring_2 58 98 IPR001841 -
Cre04g1247 252 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 41 112 - -
Cre04g1247 252 MobiDBLite consensus disorder prediction 122 143 - -
Cre04g1247 252 SUPERFAMILY RING/U-box 54 111 - -
Cre04g1247 252 ProSitePatterns Zinc finger RING-type signature. 73 82 IPR017907 -
Cre04g1247 252 ProSiteProfiles Zinc finger RING-type profile. 58 99 IPR001841 -
Cre04g1247 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 33 244 IPR045103 GO:0005783(InterPro)|GO:0006511(InterPro)|GO:0006511(PANTHER)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER)
Cre04g1247 252 Pfam Zinc finger, C3HC4 type (RING finger) 57 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1247 Cre-Chr4:31206173 Cre07g0652 Cre-Chr7:4282857 4.10E-24 dispersed
Cre04g1247 Cre-Chr4:31206173 Cre08g1481 Cre-Chr8:27641267 2.70E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1247 K10666 - csv:101205026 447.203