Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1254 ATGGGAATCGCTAAAGGTCCATTAATTTTGTCCAATAAGGCAACTAGTTGTGCCAATTCTTCTATGTCCCACGATTATCATCATCATCATCATCAAGGAATCTTCACCTTCTCTAATGGCACCTTGGATAAATCCAATTCCTCCACCCTCCCTCAACACATCCGCCCTGAGAAGCTCCGACTCGACGCCTTCTCCGCCCCGATTCCGCCATCTACGGTGGCCGAAATAGACGAACACCACCCCCACCACCATCACCAACAACAACTTCATCATGTCTATGCCACCACACCTAGTGGGGGGACCATGTTATCCGACATGTTCAATTTCCCTCCAACAACTCCCTCCGCCCCCGTTCCCGTCGAATTCTCCGACAATTTCCGAACTTTACGCCCTCCCAACTCGGCCTCGGCCATGCAACTTTTCTTGATGAACCCTCCTCCACCACCACAACCCCAACCACGATCTCCATCGCCACATTCTACCTCCTCCACTCTCCACATGCTCCTCCCGAACCCACCTGCGAACGCTCTTCAGGGTTTCGAAGGTGGGGTTGGTGTCGGAGATCAAACGGCTTTCGGTCAATTCGCTGTCGTCGAAAGTCAAGGTCTTTCACTCTCACTTCACTCTTCCTCTTTACAACACTTGGAGGACGCGGCCGCTGCTGCTGCTGCGGTCGCGAAAGCAGATGCATTGAGAATTAGGGATGGTGGGATTTTGTATAATTATAACAACAACAACAATCAAGTCCTTGATGGAGGCGATGGAGGAAGTGGATCAACATCATCAATTTTGCACTATTCTTTTAGAAATAATGAGAATTCTCCTCATAGCTTTCAAGCTCCACAAATAATGAATCCCAACCATCAAGTTCAAATTGGATTTGGGTCATCTTTAGGAGTTGTAAATGTTTTGAGGAATTCAAAATATGCCAAACCTGCACAAGAATTGCTTGAGGAGTTTTGTAGTGTTGGCAAAGTTCAATTGAAGAAAAACAAGTTCAATATTAAGCCAAACCCCGATACCGAAACCGCCACCACCTCTGCCGCCGCTATCGGTGGCTCGACATCAAAGGATCAACCTCCCTTATCAGCTGCTGACAGAATTGAGCATCAACGGAGAAAGGTCAAACTATTGTCCATGCTTGATGAGGTCGAACGTAGGTACAACCTATATCGAGAGCAAATGCAAATGGTAGTGAACTCGTTCGACCTAGTTATGGGGTTCGGAGCAGCAGCGCCTTACACAACGTTGACGCAGAAGGCGATGTCGAGGCACTTTCGGTGCTTGAAAGACGCGATTGCCGAGCAGCTAAAGCAGAGCTACGAAGCGTTGGGGGAGAAAGGAGGGAATGGAGGGTCAGGAATAACAAAAGGAGAGACACCAAGATTGAAGCTTCTTGAACAAAGCCTTCGCCAACAAAGGGCTTTCCATCAAATGGGAATGATGGAACAAGAAGCTTGGAGGCCACAGCGTGGCCTTCCTGAAAGATCAGTCAACATTCTCAGGGCTTGGCTTTTCGAGCATTTTCTTCACCCGTACCCCAGCGACGCAGACAAGCTTCTGTTAGCTCGACAGACTGGTTTGTCCAGAAATCAGGTCTCGAATTGGTTCATTAATGCAAGAGTTCGGTTGTGGAAACCGATGGTGGAAGAAATGTACCAACTTGAAGGGAAAGTGGATACAGATGAATTACAAGATGACACCACACACAATAATAATAATAATAAAACCCAAAACAATCCCATAAATAATTCACAAAATCCAACACCCACCACTGCTCCACCACCCTCAGCCAGCACCGTGGAAGAAGAAGCGGCGGAGTTCACGGCGGCGCATGAGTACTCAGATCTTCATGATGTGTGGCGACATGGAAGTAGTGGAGATCATCAACAACATTATGGGACCATGTCTGAAGATGTTACAACTGCGGCGGCTGACATGCATCCTGGACCAACACTTATAAGATTTGGGACCACAAATACGGCCACCGGTGACGTGTCCCTAACTTTAGGCCTCCGCCACACCGGAAATACCTCCGCCGCCGCCGCCGCAGATAACCCTTCTTTCTCCCTAAGAGACTTTGGTCACTCTTGA 2094 48.28 MGIAKGPLILSNKATSCANSSMSHDYHHHHHQGIFTFSNGTLDKSNSSTLPQHIRPEKLRLDAFSAPIPPSTVAEIDEHHPHHHHQQQLHHVYATTPSGGTMLSDMFNFPPTTPSAPVPVEFSDNFRTLRPPNSASAMQLFLMNPPPPPQPQPRSPSPHSTSSTLHMLLPNPPANALQGFEGGVGVGDQTAFGQFAVVESQGLSLSLHSSSLQHLEDAAAAAAAVAKADALRIRDGGILYNYNNNNNQVLDGGDGGSGSTSSILHYSFRNNENSPHSFQAPQIMNPNHQVQIGFGSSLGVVNVLRNSKYAKPAQELLEEFCSVGKVQLKKNKFNIKPNPDTETATTSAAAIGGSTSKDQPPLSAADRIEHQRRKVKLLSMLDEVERRYNLYREQMQMVVNSFDLVMGFGAAAPYTTLTQKAMSRHFRCLKDAIAEQLKQSYEALGEKGGNGGSGITKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKLLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQLEGKVDTDELQDDTTHNNNNNKTQNNPINNSQNPTPTTAPPPSASTVEEEAAEFTAAHEYSDLHDVWRHGSSGDHQQHYGTMSEDVTTAAADMHPGPTLIRFGTTNTATGDVSLTLGLRHTGNTSAAAAADNPSFSLRDFGHS 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31285032 31289947 + CrPI670011_04g012540.1 Cre04g1254 495558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1254 697 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 243 578 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre04g1254 697 SUPERFAMILY Homeodomain-like 488 555 IPR009057 -
Cre04g1254 697 Gene3D - 490 552 - -
Cre04g1254 697 ProSiteProfiles 'Homeobox' domain profile. 484 547 IPR001356 GO:0003677(InterPro)
Cre04g1254 697 MobiDBLite consensus disorder prediction 337 361 - -
Cre04g1254 697 CDD homeodomain 487 548 IPR001356 GO:0003677(InterPro)
Cre04g1254 697 SMART HOX_1 487 551 IPR001356 GO:0003677(InterPro)
Cre04g1254 697 MobiDBLite consensus disorder prediction 142 166 - -
Cre04g1254 697 MobiDBLite consensus disorder prediction 142 156 - -
Cre04g1254 697 MobiDBLite consensus disorder prediction 334 367 - -
Cre04g1254 697 Pfam Homeobox KN domain 504 543 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre04g1254 697 SMART prehox3 298 435 IPR006563 -
Cre04g1254 697 MobiDBLite consensus disorder prediction 563 606 - -
Cre04g1254 697 FunFam BEL1-like homeodomain protein 4 490 552 - -
Cre04g1254 697 Coils Coil 374 401 - -
Cre04g1254 697 Pfam Associated with HOX 303 434 IPR006563 -
Cre04g1254 697 MobiDBLite consensus disorder prediction 570 587 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1612 Cre-Chr2:28859874 Cre04g1254 Cre-Chr4:31285032 1.10E-129 dispersed
Cre03g0599 Cre-Chr3:4845081 Cre04g1254 Cre-Chr4:31285032 1.00E-62 dispersed
Cre04g0872 Cre-Chr4:27410263 Cre04g1254 Cre-Chr4:31285032 4.90E-52 dispersed
Cre04g1254 Cre-Chr4:31285032 Cre09g2275 Cre-Chr9:41969914 1.20E-73 dispersed
Cre04g1254 Cre-Chr4:31285032 Cre02g2551 Cre-Chr2:38742831 7.90E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53455 PF07526 POX 3.70E-48 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1254 - - - 0.0