Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1291 ATGAAGGATAACTCCGCCAAATATGTTGTTTTCTTGCTTATAAGCTTCTTTTTCTTGAATCAGCTCCTTGTGTCCTCACAACTTGATTATAGGTTCTATGATGCCTCTTGCCCCAACCTAACAAGGATTATAAGATATGGCGTCTGGATGGCAGTTTCTAATGATACTAGGATGGCTGCTTCTCTCTTACGGCTTCATTTTCATGATTGCTTTGTCAACGGTTGTGATGGATCATTGTTGCTTGATGACACTAGCACATTTAGGGGGGAGAAAAATGCATTGCCGAATATGAACTCAGTTCGAGGCTATGAAGTCATTGATGATATAAAGGCTGTCTTAGAGAAAGTCTGCCCATATGTTGTCTCATGTACTGATATAGTAACTCTAGCAGCTAGAGAGGCTGTCTACCTTGCTGGGGGACCATTTTGGCAAATTCCACTTGGTCGCCGAGATGGCACGACAGCAAGCGAGAGTGAAGCCAATCAGCTGCCATCACCAGTTGAGCCATTGGAGAATATCATTGCGAAATTCACTTCGAAAGGGCTTGATGTGAAGGATGTTGTTGCTCTCTCAGGTGCACACACTTTCGGATTTGCTCGGTGCATGATGTTCAAGCACAGGCTGTTCAACTTCGACGGCACTGGAAATCCCGATCCAGAACTCGACGTCATGCTGCGACAGAACTTACAGAGCAATTGTCCAAATCAAGATGACTCCAACAACAAATTTGCCCCCTTGGATGCCTACACGATCAACCGGTTCGACAATGTGTATTACAGGAACTTGGTGAACAAGTTGGGACTTCTGCAGTCAGACCAAGCTCTCATGAAAGATAATACAACTGCTTCTTTGGTGGTGAACTACAGCAGGTATCCATATCTGTTTTACAGGGACTTTGGAGCATCAATGGTGAAGCTGGCCAATACTGGGATCCTTACAGGCCAAAATGGGGAGATTAGGAAGAATTGCAGGATGGTGAACTAG 984 44.72 MKDNSAKYVVFLLISFFFLNQLLVSSQLDYRFYDASCPNLTRIIRYGVWMAVSNDTRMAASLLRLHFHDCFVNGCDGSLLLDDTSTFRGEKNALPNMNSVRGYEVIDDIKAVLEKVCPYVVSCTDIVTLAAREAVYLAGGPFWQIPLGRRDGTTASESEANQLPSPVEPLENIIAKFTSKGLDVKDVVALSGAHTFGFARCMMFKHRLFNFDGTGNPDPELDVMLRQNLQSNCPNQDDSNNKFAPLDAYTINRFDNVYYRNLVNKLGLLQSDQALMKDNTTASLVVNYSRYPYLFYRDFGASMVKLANTGILTGQNGEIRKNCRMVN 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31693565 31695110 + CrPI670011_04g012910.1 Cre04g1291 495595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1291 327 Pfam Peroxidase 48 289 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1291 327 CDD secretory_peroxidase 27 326 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cre04g1291 327 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601(InterPro)
Cre04g1291 327 Gene3D Peroxidase, domain 2 164 306 - -
Cre04g1291 327 PANTHER PEROXIDASE 72-RELATED 16 326 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1291 327 ProSiteProfiles Plant heme peroxidase family profile. 27 327 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1291 327 FunFam Peroxidase 31 178 - -
Cre04g1291 327 SUPERFAMILY Heme-dependent peroxidases 27 327 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1291 327 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1291 327 PRINTS Haem peroxidase superfamily signature 247 262 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1291 327 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1291 327 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1291 327 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1291 327 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1291 327 PRINTS Plant peroxidase signature 261 278 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1291 327 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1291 327 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1291 327 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1291 327 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1291 327 PRINTS Plant peroxidase signature 245 260 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1291 327 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1291 327 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1291 327 FunFam Peroxidase 164 306 - -
Cre04g1291 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Cre04g1291 327 Gene3D - 31 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2190 Cre-Chr2:35573423 Cre04g1291 Cre-Chr4:31693565 1.30E-71 dispersed
Cre02g2670 Cre-Chr2:39928309 Cre04g1291 Cre-Chr4:31693565 5.70E-90 dispersed
Cre03g0701 Cre-Chr3:5904930 Cre04g1291 Cre-Chr4:31693565 2.10E-68 dispersed
Cre04g1291 Cre-Chr4:31693565 Cre11g1063 Cre-Chr11:8063455 5.20E-88 dispersed
Cre01g0217 Cre-Chr1:1521968 Cre04g1291 Cre-Chr4:31693565 2.30E-58 transposed
Cre06g0873 Cre-Chr6:2052699 Cre04g1291 Cre-Chr4:31693565 5.20E-51 transposed
Cre01g0698 Cre-Chr1:6632711 Cre04g1291 Cre-Chr4:31693565 3.90E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1291 K00430 - csv:101218459 632.869