Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1313 ATGGAGTGGGTTCGAGGAGATGAGATTGGACATGGAAGTTTTGCCACCATCAATTTCGCCACGCCTTCCAATTCTTATTCTGCTCATCAGTTTCCTCCATTAATGGCGGTTAAATCATCTGGAGCTGTTTCCTCTGCCTCGCTCAAGAATGAGAAGCAAGTTTTGGATCTTCTGGGTGTTGATTGCCCACAAATTATTCGGTGTTTTGGGGACAGTTGTAGTTACGAGAACGGCGAGGAACTTTACAATCTGTTTCTCGAGTATGCTAGTGGTGGGAGTTTAGCTGATAGAATACAGAGCCGCGGTGGTCGGCTACCGGAATTTGAGGTTAGACGTTACACGAGGACGATTCTCGAAGGGCTTCGGTATATTCACGGAAAAGGATTTGTTCACTGCGATGTAAAGCCTAGGAATATTCTCGTGTTTCATGACGGTGATGTTAAGATCGCGGATTTCGGATTATCGAAGAAGGCGGGAAAAAACAGAGCAGAAAGAGGGGGAGAGGTAGGGAGATTTCAATTCAGAGGCTCTCCTCTGTACATGTCACCGGAATCGGTGAACGATAACGAGTATGAGTCGCCGTGTGACATATGGGCCGTCGGATGTGCGGTGGTCGAGATGTTGACAGGAAAACCCGCGTGGAATTGCCTGCCGGAATCCAACGTCTATTCTCTGTTACTAAAAATTGGGATCGGAGAGGAATTGCCGGAAATTCCTAAAGATCTATCGGAAGAAGGGAAAGATTTTCTCAGAAAATGCTTGGTGAAGGATCCTTCAAAGAGATGGACAGCCTATATGCTTCTGAAACACCCATTTGTAGCAGAGTCCGGGTGCTCTGTTCCATTGACGACCATGGACGAACCATCGACGTCGCCGAGATGCCCTTTCGATTTCGAAGATTGGGCATCGATTCAGTCAGAAGAGGGGGATCAGAGAATTGAGGAGGAATCAAATTGTTGGTTGAATTGGTCGTGTTCGTGGTTGTGTTGTCCGAGGGAGAGGCTGCTTCAGCTAGTGGACAATGGGCCAGTTAACTGGTCCGTCACTGACAGTTGGGTCACCGTCAGATGA 1071 47.81 MEWVRGDEIGHGSFATINFATPSNSYSAHQFPPLMAVKSSGAVSSASLKNEKQVLDLLGVDCPQIIRCFGDSCSYENGEELYNLFLEYASGGSLADRIQSRGGRLPEFEVRRYTRTILEGLRYIHGKGFVHCDVKPRNILVFHDGDVKIADFGLSKKAGKNRAERGGEVGRFQFRGSPLYMSPESVNDNEYESPCDIWAVGCAVVEMLTGKPAWNCLPESNVYSLLLKIGIGEELPEIPKDLSEEGKDFLRKCLVKDPSKRWTAYMLLKHPFVAESGCSVPLTTMDEPSTSPRCPFDFEDWASIQSEEGDQRIEEESNCWLNWSCSWLCCPRERLLQLVDNGPVNWSVTDSWVTVR 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31942065 31943135 + CrPI670011_04g013130.1 Cre04g1313 495617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1313 356 SUPERFAMILY Protein kinase-like (PK-like) 3 298 IPR011009 -
Cre04g1313 356 Pfam Protein kinase domain 5 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1313 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1313 356 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 274 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cre04g1313 356 SMART serkin_6 3 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1313 356 ProSiteProfiles Protein kinase domain profile. 3 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1313 356 ProSitePatterns Protein kinases ATP-binding region signature. 9 38 IPR017441 GO:0005524(InterPro)
Cre04g1313 356 CDD STKc_MAPKKK 2 273 - -
Cre04g1313 356 Gene3D Transferase(Phosphotransferase) domain 1 96 317 - -
Cre04g1313 356 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0537 Cre-Chr2:2492494 Cre04g1313 Cre-Chr4:31942065 6.30E-56 dispersed
Cre04g1313 Cre-Chr4:31942065 Cre09g1042 Cre-Chr9:10680609 9.10E-62 dispersed
Cre04g0305 Cre-Chr4:8582753 Cre04g1313 Cre-Chr4:31942065 1.50E-52 transposed
Cre08g0530 Cre-Chr8:17866636 Cre04g1313 Cre-Chr4:31942065 9.70E-46 transposed
Cre09g2208 Cre-Chr9:41224774 Cre04g1313 Cre-Chr4:31942065 4.30E-44 transposed
Cre02g1550 Cre-Chr2:27947778 Cre04g1313 Cre-Chr4:31942065 1.10E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64057 PF00069 Pkinase 3.00E-54 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1313 - - - 0.0