Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1317 ATGTCTGATCACAAATCAGGCTCCATGGCCGATCAGCTCTCTAAGCAGACCTCTATTTTTGGCCTACGCTTGTGGGTTGTTCTTGGGGTTTGTGTTGGAGCAGCTTTTGTGCTCTTTCTGTTTCTAATTTCTCTTTGGATTGCTTCTAAACGCTCCCGCAAGAAGATTTCTCACAGACCCACTATCCCAATCGTCTCCAAAGAAATCCAAGAGATCAGAGTCGATCATGCCCTCGCTCAAAACCAAGAACATAAGCCGAGTAGGTCCCATTTTCAGGTCGACCCACTTCCGGAGCCGGAACCAATCCCTGGAATTGAGCGGCAGGCGTTGCTTTCGTTGCCTCAGGAGGAAGAGCGAGTGAATAGGATTCATATTGAGATCGGGAAAGATCATAGGATTTCATATCCTGAGCGCCTTGGTCGGTCGTCTTCCTCACAGGGGAGTGGAGAGGGCCGATGTGGTGGCGATCAGTTACCTATGGTGGTGCCTGAAGTTTCGCATTTGGGTTGGGGACACTGGTACACTCTCAGAGAGCTTGAAGCTTCGACTAATGGTTTCGCCCCCGACAATGTAATTGGCGAGGGTGGGTATGGAATTGTTTACCATGGCATATTGGAAGATGGAACTCAGGTTGCTGTGAAGAATTTGCTAAACAATAGGGGACAAGCCGAGAAGGAGTTTAAAGTTGAAGTTGAAGCAATTGGACGAGTTAGACATAAGAACTTAGTTAGACTGCTTGGATACTGTGTTGAAGGTGCTCATAGGATGCTTGTATATGAGTATATAAATAATGGAAACTTGGAACAATGGCTCCATGGGGATGTGGGATCTTTCAGCCCTCTTACCTGGGAGATTAGAATGAATATCATTCTTGGAACCGCAAAAGGGCTAGCTTACCTTCACGAGGGATTGGAACCAAAGGTTGTTCACCGGGATATCAAATCAAGCAATATCTTACTCGATAAGCAATGGAATTCCAAGGTTTCAGATTTTGGGCTTGCAAAGCTACTATGCTCTGATAATAGTTATATTACAACCCGAGTAATGGGGACATTTGGCTATGTAGCACCAGAATATGCAAGTACGGGAATGCTAAATGAAAGAAGTGATGTGTATAGTTTTGGAATACTTGTTATGGAAATAATCTCAGGACGTAATCCCGTTGAGTATAGTCGTCCTCCAGATGAGGTGAACTTGATCGATTGGCTCAAGAGAATGGTCACTAACCAAAATCCAGAGGGCGTATTGGATCCAAAGCTTTCTGAAAAGCCTACTTCAAGAGCATTAAAGCGGGCTCTACTTGTTGCATTACGCTGCGTGGACCCAAATGCTCAGAAACGGCCAAAAATGGGACATATTATTCATATGCTTGAAGCCGAAGATGCTAACTTTAAAGGGGATCGCAAAGCTGGAAAGGACCCAGAGAATTCACATTCAAACAATGTCAAAGATGGTTTAAATGAAAGGCAGGCGACAGAATTAGGTGGCAGCAGTGTTGATGGACTCATCCTTATACCATTGAAGATAAAATCAATTCATGTCTCCGTCGATGCCCCTCCCAAGACGGTCTTTGCGGAGGAGGAAGGGGTAGCAAAGCTCAAGCTTTATGTCACTTGA 1617 45.02 MSDHKSGSMADQLSKQTSIFGLRLWVVLGVCVGAAFVLFLFLISLWIASKRSRKKISHRPTIPIVSKEIQEIRVDHALAQNQEHKPSRSHFQVDPLPEPEPIPGIERQALLSLPQEEERVNRIHIEIGKDHRISYPERLGRSSSSQGSGEGRCGGDQLPMVVPEVSHLGWGHWYTLRELEASTNGFAPDNVIGEGGYGIVYHGILEDGTQVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCVEGAHRMLVYEYINNGNLEQWLHGDVGSFSPLTWEIRMNIILGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKQWNSKVSDFGLAKLLCSDNSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILVMEIISGRNPVEYSRPPDEVNLIDWLKRMVTNQNPEGVLDPKLSEKPTSRALKRALLVALRCVDPNAQKRPKMGHIIHMLEAEDANFKGDRKAGKDPENSHSNNVKDGLNERQATELGGSSVDGLILIPLKIKSIHVSVDAPPKTVFAEEEGVAKLKLYVT 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31963346 31966481 - CrPI670011_04g013170.1 Cre04g1317 495621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1317 538 ProSiteProfiles Protein kinase domain profile. 186 464 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1317 538 Pfam Protein tyrosine and serine/threonine kinase 190 456 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1317 538 SUPERFAMILY Protein kinase-like (PK-like) 167 458 IPR011009 -
Cre04g1317 538 SMART serkin_6 186 457 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1317 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1317 538 FunFam Probable serine/threonine-protein kinase At1g01540 166 261 - -
Cre04g1317 538 FunFam Putative receptor-like serine/threonine-protein kinase 262 472 - -
Cre04g1317 538 Gene3D Transferase(Phosphotransferase) domain 1 262 472 - -
Cre04g1317 538 CDD STKc_IRAK 192 458 - -
Cre04g1317 538 MobiDBLite consensus disorder prediction 466 488 - -
Cre04g1317 538 Gene3D Phosphorylase Kinase; domain 1 167 261 - -
Cre04g1317 538 ProSitePatterns Protein kinases ATP-binding region signature. 192 214 IPR017441 GO:0005524(InterPro)
Cre04g1317 538 PANTHER OS01G0323000 PROTEIN 8 484 IPR052232 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1317 Cre-Chr4:31963346 Cre05g0215 Cre-Chr5:2097555 2.90E-168 dispersed
Cre04g1317 Cre-Chr4:31963346 Cre06g2596 Cre-Chr6:33658888 9.80E-62 wgd
Cre04g1317 Cre-Chr4:31963346 Cre08g1550 Cre-Chr8:28157548 1.10E-199 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64058 PF00069 Pkinase 5.30E-47 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1317 - - - 0.0