Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g1317 | ATGTCTGATCACAAATCAGGCTCCATGGCCGATCAGCTCTCTAAGCAGACCTCTATTTTTGGCCTACGCTTGTGGGTTGTTCTTGGGGTTTGTGTTGGAGCAGCTTTTGTGCTCTTTCTGTTTCTAATTTCTCTTTGGATTGCTTCTAAACGCTCCCGCAAGAAGATTTCTCACAGACCCACTATCCCAATCGTCTCCAAAGAAATCCAAGAGATCAGAGTCGATCATGCCCTCGCTCAAAACCAAGAACATAAGCCGAGTAGGTCCCATTTTCAGGTCGACCCACTTCCGGAGCCGGAACCAATCCCTGGAATTGAGCGGCAGGCGTTGCTTTCGTTGCCTCAGGAGGAAGAGCGAGTGAATAGGATTCATATTGAGATCGGGAAAGATCATAGGATTTCATATCCTGAGCGCCTTGGTCGGTCGTCTTCCTCACAGGGGAGTGGAGAGGGCCGATGTGGTGGCGATCAGTTACCTATGGTGGTGCCTGAAGTTTCGCATTTGGGTTGGGGACACTGGTACACTCTCAGAGAGCTTGAAGCTTCGACTAATGGTTTCGCCCCCGACAATGTAATTGGCGAGGGTGGGTATGGAATTGTTTACCATGGCATATTGGAAGATGGAACTCAGGTTGCTGTGAAGAATTTGCTAAACAATAGGGGACAAGCCGAGAAGGAGTTTAAAGTTGAAGTTGAAGCAATTGGACGAGTTAGACATAAGAACTTAGTTAGACTGCTTGGATACTGTGTTGAAGGTGCTCATAGGATGCTTGTATATGAGTATATAAATAATGGAAACTTGGAACAATGGCTCCATGGGGATGTGGGATCTTTCAGCCCTCTTACCTGGGAGATTAGAATGAATATCATTCTTGGAACCGCAAAAGGGCTAGCTTACCTTCACGAGGGATTGGAACCAAAGGTTGTTCACCGGGATATCAAATCAAGCAATATCTTACTCGATAAGCAATGGAATTCCAAGGTTTCAGATTTTGGGCTTGCAAAGCTACTATGCTCTGATAATAGTTATATTACAACCCGAGTAATGGGGACATTTGGCTATGTAGCACCAGAATATGCAAGTACGGGAATGCTAAATGAAAGAAGTGATGTGTATAGTTTTGGAATACTTGTTATGGAAATAATCTCAGGACGTAATCCCGTTGAGTATAGTCGTCCTCCAGATGAGGTGAACTTGATCGATTGGCTCAAGAGAATGGTCACTAACCAAAATCCAGAGGGCGTATTGGATCCAAAGCTTTCTGAAAAGCCTACTTCAAGAGCATTAAAGCGGGCTCTACTTGTTGCATTACGCTGCGTGGACCCAAATGCTCAGAAACGGCCAAAAATGGGACATATTATTCATATGCTTGAAGCCGAAGATGCTAACTTTAAAGGGGATCGCAAAGCTGGAAAGGACCCAGAGAATTCACATTCAAACAATGTCAAAGATGGTTTAAATGAAAGGCAGGCGACAGAATTAGGTGGCAGCAGTGTTGATGGACTCATCCTTATACCATTGAAGATAAAATCAATTCATGTCTCCGTCGATGCCCCTCCCAAGACGGTCTTTGCGGAGGAGGAAGGGGTAGCAAAGCTCAAGCTTTATGTCACTTGA | 1617 | 45.02 | MSDHKSGSMADQLSKQTSIFGLRLWVVLGVCVGAAFVLFLFLISLWIASKRSRKKISHRPTIPIVSKEIQEIRVDHALAQNQEHKPSRSHFQVDPLPEPEPIPGIERQALLSLPQEEERVNRIHIEIGKDHRISYPERLGRSSSSQGSGEGRCGGDQLPMVVPEVSHLGWGHWYTLRELEASTNGFAPDNVIGEGGYGIVYHGILEDGTQVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCVEGAHRMLVYEYINNGNLEQWLHGDVGSFSPLTWEIRMNIILGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKQWNSKVSDFGLAKLLCSDNSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILVMEIISGRNPVEYSRPPDEVNLIDWLKRMVTNQNPEGVLDPKLSEKPTSRALKRALLVALRCVDPNAQKRPKMGHIIHMLEAEDANFKGDRKAGKDPENSHSNNVKDGLNERQATELGGSSVDGLILIPLKIKSIHVSVDAPPKTVFAEEEGVAKLKLYVT | 538 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 31963346 | 31966481 | - | CrPI670011_04g013170.1 | Cre04g1317 | 495621 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g1317 | 538 | ProSiteProfiles | Protein kinase domain profile. | 186 | 464 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre04g1317 | 538 | Pfam | Protein tyrosine and serine/threonine kinase | 190 | 456 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre04g1317 | 538 | SUPERFAMILY | Protein kinase-like (PK-like) | 167 | 458 | IPR011009 | - | |
Cre04g1317 | 538 | SMART | serkin_6 | 186 | 457 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre04g1317 | 538 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 308 | 320 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre04g1317 | 538 | FunFam | Probable serine/threonine-protein kinase At1g01540 | 166 | 261 | - | - | |
Cre04g1317 | 538 | FunFam | Putative receptor-like serine/threonine-protein kinase | 262 | 472 | - | - | |
Cre04g1317 | 538 | Gene3D | Transferase(Phosphotransferase) domain 1 | 262 | 472 | - | - | |
Cre04g1317 | 538 | CDD | STKc_IRAK | 192 | 458 | - | - | |
Cre04g1317 | 538 | MobiDBLite | consensus disorder prediction | 466 | 488 | - | - | |
Cre04g1317 | 538 | Gene3D | Phosphorylase Kinase; domain 1 | 167 | 261 | - | - | |
Cre04g1317 | 538 | ProSitePatterns | Protein kinases ATP-binding region signature. | 192 | 214 | IPR017441 | GO:0005524(InterPro) | |
Cre04g1317 | 538 | PANTHER | OS01G0323000 PROTEIN | 8 | 484 | IPR052232 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g1317 | Cre-Chr4:31963346 | Cre05g0215 | Cre-Chr5:2097555 | 2.90E-168 | dispersed | |
Cre04g1317 | Cre-Chr4:31963346 | Cre06g2596 | Cre-Chr6:33658888 | 9.80E-62 | wgd | |
Cre04g1317 | Cre-Chr4:31963346 | Cre08g1550 | Cre-Chr8:28157548 | 1.10E-199 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64058 | PF00069 | Pkinase | 5.30E-47 | CL0016 | Cre | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g1317 | - | - | - | 0.0 |