Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1318 ATGGACCATTCCATTCCCAACAACTGCGATGGAAATGCATGTACTTCGTCGACGTGGACTCTCCCCACCGCCGCCGTCTCCTCCACTTCCCCTCCCGACGATATCTCTCTGTTTCTGCAACAGATTTTGCTACGTTCCTCTTCCTCTGCTCCCCATTCCTCTCTCCTCTCTCCCTCTCCCTCCATCTTCTCCGAGCTCACCTGCAACATTAGAGCCTTCACCCCATCAACCCATAACATTCCCCCTCCATACGGGCCGTCTAATGCAGTGCCCGACGAGATCTCCGCCGTCGATTCCTCAGAACAATTTGCAAATTCCTCATCGTCCGGTGTACTACATGATCCCTTGCGCTCTTGTCCCACACCCATTCCACCCAATGCGTCTTCTACGTCGGTTGGAGCTAGTGATCACAACGAAAACGATGAATTTGACTGCGAAAGTGAGGAGGGTCTGGAGGCATTGGTTGAAGAGCAGCCTACAAAGCCAAATCCTCGCAGCTCTTCCAAAAGAAGCAGAGCCGCCGAAGTTCATAATTTGTCTGAAAAGAGAAGGAGGAGCAGAATTAATGAGAAAATGAAGGCACTGCAAAATCTGATCCCTAATTCTAACAAGACTGACAAGGCCTCGATGCTGGACGAAGCAATTGAATATCTGAAGCAGCTTCAACTTCAAGTTCAGATGCTGTCGATGAGAAATGGCTTGAGTTTGCATCCTATGAACTTGCCTGGAAGTCTGCAATATCTCCAACTTTCCCACATGAGAATGGAGTTTGGTGAAGAAAACAGGTCAATGTCTTCTGACCAAGAAAGACCAAACCAGATCTTTCTCAGTTTGCCTGACCAAAAGACTGCCTCCATCCATCCTTTCATGTCAGACATTGGAAGAACTAATGCAGAAACTCCATTTGAATTGACCCCGCCCATCCAGGCTCAACTAGTCCCTTTTTACTTGAGTGAGTCCTCCAAGTCTAAGGAGATTTGCAGCAGAGATGTACTGCGAGGTGATCACCAGGTGAATATGAATGTGAGCCAATCGGAGACAACTCCCTTCATGTCACACCCCTATAATATATCGGCGCCTCCTGATTTACAAGGATTAAGGAATTGCGTCTCAGTGGAACCAAGCATCATAGAAGGAAATCGGTCAGGTGTGCTTCTAAATTACACTCCAGAGCACAGCCTTGTATTCCCTTCCCCTCTTAATGGCATTGACACAGGAAGACCAACTGAAACAACAGAGCTGCAATGA 1248 47.84 MDHSIPNNCDGNACTSSTWTLPTAAVSSTSPPDDISLFLQQILLRSSSSAPHSSLLSPSPSIFSELTCNIRAFTPSTHNIPPPYGPSNAVPDEISAVDSSEQFANSSSSGVLHDPLRSCPTPIPPNASSTSVGASDHNENDEFDCESEEGLEALVEEQPTKPNPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMNLPGSLQYLQLSHMRMEFGEENRSMSSDQERPNQIFLSLPDQKTASIHPFMSDIGRTNAETPFELTPPIQAQLVPFYLSESSKSKEICSRDVLRGDHQVNMNVSQSETTPFMSHPYNISAPPDLQGLRNCVSVEPSIIEGNRSGVLLNYTPEHSLVFPSPLNGIDTGRPTETTELQ 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31969384 31971573 - CrPI670011_04g013180.1 Cre04g1318 495622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1318 415 Gene3D - 167 231 IPR036638 GO:0046983(InterPro)
Cre04g1318 415 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 32 335 IPR031066 GO:0005634(PANTHER)
Cre04g1318 415 Coils Coil 211 231 - -
Cre04g1318 415 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 232 IPR036638 GO:0046983(InterPro)
Cre04g1318 415 FunFam Basic helix-loop-helix transcription factor 167 230 - -
Cre04g1318 415 CDD bHLH_AtPIF_like 172 234 IPR047265 -
Cre04g1318 415 SMART finulus 178 227 IPR011598 GO:0046983(InterPro)
Cre04g1318 415 MobiDBLite consensus disorder prediction 168 184 - -
Cre04g1318 415 Pfam Helix-loop-helix DNA-binding domain 175 222 IPR011598 GO:0046983(InterPro)
Cre04g1318 415 MobiDBLite consensus disorder prediction 98 184 - -
Cre04g1318 415 MobiDBLite consensus disorder prediction 98 114 - -
Cre04g1318 415 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1318 Cre-Chr4:31969384 Cre08g1551 Cre-Chr8:28163974 3.30E-39 dispersed
Cre04g1318 Cre-Chr4:31969384 Cre05g2188 Cre-Chr5:33610785 3.70E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53465 PF00010 HLH 4.90E-14 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1318 - - - 0.0