Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g1318 | ATGGACCATTCCATTCCCAACAACTGCGATGGAAATGCATGTACTTCGTCGACGTGGACTCTCCCCACCGCCGCCGTCTCCTCCACTTCCCCTCCCGACGATATCTCTCTGTTTCTGCAACAGATTTTGCTACGTTCCTCTTCCTCTGCTCCCCATTCCTCTCTCCTCTCTCCCTCTCCCTCCATCTTCTCCGAGCTCACCTGCAACATTAGAGCCTTCACCCCATCAACCCATAACATTCCCCCTCCATACGGGCCGTCTAATGCAGTGCCCGACGAGATCTCCGCCGTCGATTCCTCAGAACAATTTGCAAATTCCTCATCGTCCGGTGTACTACATGATCCCTTGCGCTCTTGTCCCACACCCATTCCACCCAATGCGTCTTCTACGTCGGTTGGAGCTAGTGATCACAACGAAAACGATGAATTTGACTGCGAAAGTGAGGAGGGTCTGGAGGCATTGGTTGAAGAGCAGCCTACAAAGCCAAATCCTCGCAGCTCTTCCAAAAGAAGCAGAGCCGCCGAAGTTCATAATTTGTCTGAAAAGAGAAGGAGGAGCAGAATTAATGAGAAAATGAAGGCACTGCAAAATCTGATCCCTAATTCTAACAAGACTGACAAGGCCTCGATGCTGGACGAAGCAATTGAATATCTGAAGCAGCTTCAACTTCAAGTTCAGATGCTGTCGATGAGAAATGGCTTGAGTTTGCATCCTATGAACTTGCCTGGAAGTCTGCAATATCTCCAACTTTCCCACATGAGAATGGAGTTTGGTGAAGAAAACAGGTCAATGTCTTCTGACCAAGAAAGACCAAACCAGATCTTTCTCAGTTTGCCTGACCAAAAGACTGCCTCCATCCATCCTTTCATGTCAGACATTGGAAGAACTAATGCAGAAACTCCATTTGAATTGACCCCGCCCATCCAGGCTCAACTAGTCCCTTTTTACTTGAGTGAGTCCTCCAAGTCTAAGGAGATTTGCAGCAGAGATGTACTGCGAGGTGATCACCAGGTGAATATGAATGTGAGCCAATCGGAGACAACTCCCTTCATGTCACACCCCTATAATATATCGGCGCCTCCTGATTTACAAGGATTAAGGAATTGCGTCTCAGTGGAACCAAGCATCATAGAAGGAAATCGGTCAGGTGTGCTTCTAAATTACACTCCAGAGCACAGCCTTGTATTCCCTTCCCCTCTTAATGGCATTGACACAGGAAGACCAACTGAAACAACAGAGCTGCAATGA | 1248 | 47.84 | MDHSIPNNCDGNACTSSTWTLPTAAVSSTSPPDDISLFLQQILLRSSSSAPHSSLLSPSPSIFSELTCNIRAFTPSTHNIPPPYGPSNAVPDEISAVDSSEQFANSSSSGVLHDPLRSCPTPIPPNASSTSVGASDHNENDEFDCESEEGLEALVEEQPTKPNPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMNLPGSLQYLQLSHMRMEFGEENRSMSSDQERPNQIFLSLPDQKTASIHPFMSDIGRTNAETPFELTPPIQAQLVPFYLSESSKSKEICSRDVLRGDHQVNMNVSQSETTPFMSHPYNISAPPDLQGLRNCVSVEPSIIEGNRSGVLLNYTPEHSLVFPSPLNGIDTGRPTETTELQ | 415 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 31969384 | 31971573 | - | CrPI670011_04g013180.1 | Cre04g1318 | 495622 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g1318 | 415 | Gene3D | - | 167 | 231 | IPR036638 | GO:0046983(InterPro) | |
Cre04g1318 | 415 | PANTHER | TRANSCRIPTION FACTOR PIF1-RELATED | 32 | 335 | IPR031066 | GO:0005634(PANTHER) | |
Cre04g1318 | 415 | Coils | Coil | 211 | 231 | - | - | |
Cre04g1318 | 415 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 169 | 232 | IPR036638 | GO:0046983(InterPro) | |
Cre04g1318 | 415 | FunFam | Basic helix-loop-helix transcription factor | 167 | 230 | - | - | |
Cre04g1318 | 415 | CDD | bHLH_AtPIF_like | 172 | 234 | IPR047265 | - | |
Cre04g1318 | 415 | SMART | finulus | 178 | 227 | IPR011598 | GO:0046983(InterPro) | |
Cre04g1318 | 415 | MobiDBLite | consensus disorder prediction | 168 | 184 | - | - | |
Cre04g1318 | 415 | Pfam | Helix-loop-helix DNA-binding domain | 175 | 222 | IPR011598 | GO:0046983(InterPro) | |
Cre04g1318 | 415 | MobiDBLite | consensus disorder prediction | 98 | 184 | - | - | |
Cre04g1318 | 415 | MobiDBLite | consensus disorder prediction | 98 | 114 | - | - | |
Cre04g1318 | 415 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 172 | 221 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g1318 | Cre-Chr4:31969384 | Cre08g1551 | Cre-Chr8:28163974 | 3.30E-39 | dispersed | |
Cre04g1318 | Cre-Chr4:31969384 | Cre05g2188 | Cre-Chr5:33610785 | 3.70E-06 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53465 | PF00010 | HLH | 4.90E-14 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g1318 | - | - | - | 0.0 |