Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1319 ATGCAAATCTCTAGGGTTCAATCATTCTATCCTCTGGACACGTCCACATCGAAATCACAAAGTAATGAGACTGTGATGACTGGTCTGTGTTTGGACGTTGATCCGATGTTCAATGACGTCTTCAAGCTGCTGCCACCCACCGATGTTGCTCAGAACCACCATCTCCGATCTGATCTACCGCCGCTCATTGTTGATCCATTTGTGCTTGTCGTTGCACCGTTGTTCGTCGTTGATCTGTTCGCCTACACCTCTTACATACTAGAAACCAGTGTATATCCCAAAGAGCATGAAGCTCTAAAAGAACTCAGAGAATTAACCGCCAAACACCCTTGGATGGTTCTTAAGCTCATGAACGCCAAGAACACAATGGAAATTGGCGTTTTCACTGGCTACTCTCTACTTGCCACTGCCCTCGCTCTTCCCCATGATGGCAAGAAGGCTGGTGTTGCTCATAAGACTGATTTCAGAGAGGGCCCTGCCATGCCTCTTCTTGACCAAATGGAACAGTTTGATTTCATATTTGTGGATGCGGACAAAGATAAGAGGGCAATGGAGCTTGTGAAGATTATTGGTGGTGTGATTGGGTATGACAACCCTCTGTGGGCAGGGTCTGTGGTGGCACCGCCGGATGCTCCTCTTAAAAACTACATTAGGTATTGTAGAGACTTTATGTTGGAGTTCAACCAAGCAGTGGCAAATGATCCTATAATTGAAATTTCTCAACTTGCGGCCGCAACCTTTGGAATTCAACACACAGTGGTTGCTGCGACTGCGAGTCATCAAGCCGCGGAAAGCTTTCTTCAGGATTTGGTGGGAATGGTTAAAACCAAGCACCAAAAGTCCAACTCTAAGCGACACCCACAAAACAAAAAGCCTGGAAAGTCACCTGAAATTTCTCAGTTTCGTGCTCAGCTTGACTTATTGAACCTTCAAATTGTTCAAGTGACTGCAGATGGTAATTGTTTTTTCAGGGCCCTTGCAGATCAGTTAGATGGCGATCAAGAGGAACATGGAAAGTATCGCAAGATGGTTGTTCAATACATTTTGAAGAATCGTGAAATGTTTGAGCCATTTATTGAGGATGATGTCCCATTTGATGAATACTGTGATTCCATGGAAAAGGATGGTACCTGGGCTGGACATCTAGAACTGCAGGCTGCTTCTCTTGTTACTCATTGTAATATATGCATTCACCGGATGTCATCACCTCGTTGGTACATACGAAATTTCGAGGATCGAGAAGCTCATATGGTCCACTTATCTTATCATGACGAGGAACATTATAATAGTGTGCGGTCGAAGGAAGACACGTGTGCTGGCCCAGCTAGGTTAATCATTATCAAAGGTGATACTGTTACTTCAGCAAGCTCACTTCAAAGAAAAGTTCTCTCTCATTCTCAAAAGAGTGGTGAAAGTGCTACGTATCCTGGAAATATTAAGTTAGTAATGGCAGGCAGTGGTTGTCAAAATTCTAAAAAAGTTGAAAAGGTTTTGGTCCAAGTCAATGGTGATGTTGATGCTGCAATAGAGTTTCTGGTGGCAGAACAGGCAGGAGAAGAACACGAAGAGCCAACTGAATCAACTTTGTGTCATATAGATTCTTCTTTTGGTATCGATGAAACAAAAGATTATGAGCAATTGGAAGAGCGAATAGAAGAGAAGAATGACAAAGTTGATTCATCTAGTCACAACACTAAACATTCTAACCGTAGCAGTTTTCAATCCGATGACAAGAGGATACCAAGGAATAAAGTCTGCCCATGTGGCTCAAAAAAGAAACATAAAGCTTGCTGTGTATCAGTTGCTGCCAGAACAAAACTATCGACTCTAAGAAGACTAGAAAGGAAAGGAAAGCTGGCAAGAAAGGTGGACTTGCTAAAGTTGAAGTGTCCTCTGGATCTGATGGATTGCCACATGACTTGGGAGCTCTTTGCATTTGATCTTCATCTGGCGGGCTTCCCCTCATTATGTATAAAACAGTCATCTTTACATAACCGAAATTTGCATCATAGTGATGTCTTCAAGTTCGGGATATATGATGGTGCAGTCTATCACTGGTTTATGGGGCTCCTGCGAAGCTTGATTTCCGAAACTACCATGTCTGGGAAGAGTCGAGTCAGTTCAAATTGGCGAGTGTCTGGAACCGAGATTAGCAAGTTCAGTCATAAACTGCAGAAGATACAGAAATCCTTTGGCTTCCCATCCCCAAGCTTGGGAACAACGGTTGAGTTGAAGTACTTGCTCTGGTAA 2250 43.33 MQISRVQSFYPLDTSTSKSQSNETVMTGLCLDVDPMFNDVFKLLPPTDVAQNHHLRSDLPPLIVDPFVLVVAPLFVVDLFAYTSYILETSVYPKEHEALKELRELTAKHPWMVLKLMNAKNTMEIGVFTGYSLLATALALPHDGKKAGVAHKTDFREGPAMPLLDQMEQFDFIFVDADKDKRAMELVKIIGGVIGYDNPLWAGSVVAPPDAPLKNYIRYCRDFMLEFNQAVANDPIIEISQLAAATFGIQHTVVAATASHQAAESFLQDLVGMVKTKHQKSNSKRHPQNKKPGKSPEISQFRAQLDLLNLQIVQVTADGNCFFRALADQLDGDQEEHGKYRKMVVQYILKNREMFEPFIEDDVPFDEYCDSMEKDGTWAGHLELQAASLVTHCNICIHRMSSPRWYIRNFEDREAHMVHLSYHDEEHYNSVRSKEDTCAGPARLIIIKGDTVTSASSLQRKVLSHSQKSGESATYPGNIKLVMAGSGCQNSKKVEKVLVQVNGDVDAAIEFLVAEQAGEEHEEPTESTLCHIDSSFGIDETKDYEQLEERIEEKNDKVDSSSHNTKHSNRSSFQSDDKRIPRNKVCPCGSKKKHKACCVSVAARTKLSTLRRLERKGKLARKVDLLKLKCPLDLMDCHMTWELFAFDLHLAGFPSLCIKQSSLHNRNLHHSDVFKFGIYDGAVYHWFMGLLRSLISETTMSGKSRVSSNWRVSGTEISKFSHKLQKIQKSFGFPSPSLGTTVELKYLLW 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31977521 31990781 + CrPI670011_04g013190.1 Cre04g1319 495623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1319 749 Pfam O-methyltransferase 145 243 IPR002935 GO:0008171(InterPro)
Cre04g1319 749 PANTHER O-METHYLTRANSFERASE-RELATED 82 145 IPR050362 GO:0008757(PANTHER)
Cre04g1319 749 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 85 240 IPR029063 -
Cre04g1319 749 Gene3D - 490 601 - -
Cre04g1319 749 MobiDBLite consensus disorder prediction 553 578 - -
Cre04g1319 749 Gene3D - 295 434 - -
Cre04g1319 749 FunFam OTU domain-containing protein 3 295 434 - -
Cre04g1319 749 SUPERFAMILY Cysteine proteinases 293 435 IPR038765 -
Cre04g1319 749 SUPERFAMILY Sec-C motif 580 600 - -
Cre04g1319 749 MobiDBLite consensus disorder prediction 277 296 - -
Cre04g1319 749 ProSiteProfiles OTU domain profile. 310 434 IPR003323 -
Cre04g1319 749 Gene3D Vaccinia Virus protein VP39 146 249 IPR029063 -
Cre04g1319 749 Gene3D Vaccinia Virus protein VP39 80 145 IPR029063 -
Cre04g1319 749 CDD OTU_plant_OTU7-like 309 432 - -
Cre04g1319 749 Coils Coil 537 564 - -
Cre04g1319 749 Pfam OTU-like cysteine protease 317 428 IPR003323 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1319 Cre-Chr4:31977521 Cre11g1802 Cre-Chr11:29603335 3.50E-31 dispersed
Cre01g1081 Cre-Chr1:19032672 Cre04g1319 Cre-Chr4:31977521 3.40E-12 transposed
Cre02g0953 Cre-Chr2:6791640 Cre04g1319 Cre-Chr4:31977521 3.00E-56 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1319 K13717 - csv:101217362 692.96