Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1320 ATGTGGGATCTGAACGATTGGCCTGATGTGAGGGAGGAGGATGAATGTTCGTCGGCGAAGACATCGATTGAAGGAGAGGGGGAGGAGGAGAAAGGGAAAAGAGTGGGATCGGTTTCCAATTCAAGTTCTTCTGCTGTGGTTGTGGAGGAGGAGGAAGATGTGGAAGTGGAAGGATCCGATGAGGAGGAACCCACGCCCATGGTCATCACTCGCCAGTTTTTCCCACTCGAAGAAACTCCCCTTCCACCTCCTTCTTCTGCCGCCTTCCCTCGGGCTCACTGGGTTGGGGTCAAATTTGCCCACCCCGATCCTCTCGCCGCTCCTAATAATTCTATCACCCCCACCGACCTCTCTCACCCCATTAAGAAGAGCCGCCGCGGCCCAAGGTCCCGTAGCTCCCAGTACCGCGGCGTCACTTTCTACCGGAGAACCGGCCGTTGGGAGTCCCATATTTGGGATTGCGGAAAGCAAGTCTATCTCGGTGGATTCGATACGGCACATGCAGCTGCTCGTGCTTACGATAGGGCGGCCATTAAATTCCGAGGAGTGGAAGCGGACATAAACTTCAGCATCGAAGATTACGAAGACGATTTAAAACAGATGGGAAATCTAACCAAGGAGGAATTTGTGCATGTACTTCGCCGACAAAGCACTGGCTTCCCCAGAGGGAGCTCCAAGTATAGAGGTGTAACACTTCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTCTTGGCAAAAAGTATGTCTATTTGGGTTTGTTCGATACCGAGATTGAAGCCGCAAGGGCTTATGATAAAGCTGCAATCAAGTGTAATGGCAAAGAAGCTGTCACCAATTTCGATCCCAGCATCTACGAGAATGAACTGAACCCGACAACTGATTCAAGTAGCAATTTGGCGGATCATAGTCTTGATTTGAGTTTAGGAAATTCAAGCTCAAAGCAAAACGACAGCTCAAATGGTTCCATAGGTCCACACCATTCTTCTTCGGCTGATTGGCAACGCAATCAAGGATTTAGGCCACTTCAGCTAAATTTGGAAAATGGAGGAGGTGGGAACAAAAATTACAATAATGTAGAGAGAAGAAATAGGTACCTGGAGAGTGAAACCATGCAGCTGCTAAGCCAAACGCACATTCAATCTCCCGCTTCATTTGAAATGCAAAGACACGGTCAGGCTCAATTCAGCCGGCCACAGACGGCGGTTGGCGCAGCAGATCAGCCAAACTCCCAGATATTGCTTCACAATCACAATCACAATCCAACCTTCAACTATCAATTTTCAGGCAGCAGTAATGGAGGCCGAATGGTAGGAAGTGATTTATCATTATCTCTAAATGATCATCTTCAATCGGGGCCATCTCAAGTTCTTGCAACTGCTGCAGCATCATCAGGATTCGCACCCCAGATTAGACCTTCCAAAAATTGGCTGCACAACAATGGCTTTCATTGTCTCATGAGACCCTCTTGA 1476 48.64 MWDLNDWPDVREEDECSSAKTSIEGEGEEEKGKRVGSVSNSSSSAVVVEEEEDVEVEGSDEEEPTPMVITRQFFPLEETPLPPPSSAAFPRAHWVGVKFAHPDPLAAPNNSITPTDLSHPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNPTTDSSSNLADHSLDLSLGNSSSKQNDSSNGSIGPHHSSSADWQRNQGFRPLQLNLENGGGGNKNYNNVERRNRYLESETMQLLSQTHIQSPASFEMQRHGQAQFSRPQTAVGAADQPNSQILLHNHNHNPTFNYQFSGSSNGGRMVGSDLSLSLNDHLQSGPSQVLATAAASSGFAPQIRPSKNWLHNNGFHCLMRPS 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32003930 32006438 - CrPI670011_04g013200.1 Cre04g1320 495624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1320 491 Pfam AP2 domain 134 182 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1320 491 Pfam AP2 domain 225 275 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1320 491 Gene3D AP2/ERF domain 225 284 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1320 491 Gene3D AP2/ERF domain 133 192 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1320 491 MobiDBLite consensus disorder prediction 105 134 - -
Cre04g1320 491 FunFam AP2-like ethylene-responsive transcription factor 225 285 - -
Cre04g1320 491 CDD AP2 134 189 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1320 491 PRINTS Ethylene responsive element binding protein signature 227 238 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1320 491 PRINTS Ethylene responsive element binding protein signature 265 285 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1320 491 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 40 355 - -
Cre04g1320 491 SUPERFAMILY DNA-binding domain 133 191 IPR016177 GO:0003677(InterPro)
Cre04g1320 491 CDD AP2 225 285 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1320 491 SMART rav1_2 134 196 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1320 491 SMART rav1_2 226 289 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1320 491 FunFam AP2-like ethylene-responsive transcription factor 133 192 - -
Cre04g1320 491 MobiDBLite consensus disorder prediction 290 335 - -
Cre04g1320 491 ProSiteProfiles AP2/ERF domain profile. 226 283 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1320 491 ProSiteProfiles AP2/ERF domain profile. 134 190 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1320 491 SUPERFAMILY DNA-binding domain 225 285 IPR016177 GO:0003677(InterPro)
Cre04g1320 491 MobiDBLite consensus disorder prediction 48 62 - -
Cre04g1320 491 MobiDBLite consensus disorder prediction 1 35 - -
Cre04g1320 491 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2381 Cre-Chr2:37234669 Cre04g1320 Cre-Chr4:32003930 6.80E-92 dispersed
Cre04g0972 Cre-Chr4:28342347 Cre04g1320 Cre-Chr4:32003930 3.20E-85 dispersed
Cre04g1320 Cre-Chr4:32003930 Cre10g2174 Cre-Chr10:36291159 1.30E-90 dispersed
Cre02g1541 Cre-Chr2:27750047 Cre04g1320 Cre-Chr4:32003930 1.10E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53466 PF00847 AP2 3.30E-10 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1320 K09284 - csv:101214724 769.229