Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g1320 | ATGTGGGATCTGAACGATTGGCCTGATGTGAGGGAGGAGGATGAATGTTCGTCGGCGAAGACATCGATTGAAGGAGAGGGGGAGGAGGAGAAAGGGAAAAGAGTGGGATCGGTTTCCAATTCAAGTTCTTCTGCTGTGGTTGTGGAGGAGGAGGAAGATGTGGAAGTGGAAGGATCCGATGAGGAGGAACCCACGCCCATGGTCATCACTCGCCAGTTTTTCCCACTCGAAGAAACTCCCCTTCCACCTCCTTCTTCTGCCGCCTTCCCTCGGGCTCACTGGGTTGGGGTCAAATTTGCCCACCCCGATCCTCTCGCCGCTCCTAATAATTCTATCACCCCCACCGACCTCTCTCACCCCATTAAGAAGAGCCGCCGCGGCCCAAGGTCCCGTAGCTCCCAGTACCGCGGCGTCACTTTCTACCGGAGAACCGGCCGTTGGGAGTCCCATATTTGGGATTGCGGAAAGCAAGTCTATCTCGGTGGATTCGATACGGCACATGCAGCTGCTCGTGCTTACGATAGGGCGGCCATTAAATTCCGAGGAGTGGAAGCGGACATAAACTTCAGCATCGAAGATTACGAAGACGATTTAAAACAGATGGGAAATCTAACCAAGGAGGAATTTGTGCATGTACTTCGCCGACAAAGCACTGGCTTCCCCAGAGGGAGCTCCAAGTATAGAGGTGTAACACTTCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTCTTGGCAAAAAGTATGTCTATTTGGGTTTGTTCGATACCGAGATTGAAGCCGCAAGGGCTTATGATAAAGCTGCAATCAAGTGTAATGGCAAAGAAGCTGTCACCAATTTCGATCCCAGCATCTACGAGAATGAACTGAACCCGACAACTGATTCAAGTAGCAATTTGGCGGATCATAGTCTTGATTTGAGTTTAGGAAATTCAAGCTCAAAGCAAAACGACAGCTCAAATGGTTCCATAGGTCCACACCATTCTTCTTCGGCTGATTGGCAACGCAATCAAGGATTTAGGCCACTTCAGCTAAATTTGGAAAATGGAGGAGGTGGGAACAAAAATTACAATAATGTAGAGAGAAGAAATAGGTACCTGGAGAGTGAAACCATGCAGCTGCTAAGCCAAACGCACATTCAATCTCCCGCTTCATTTGAAATGCAAAGACACGGTCAGGCTCAATTCAGCCGGCCACAGACGGCGGTTGGCGCAGCAGATCAGCCAAACTCCCAGATATTGCTTCACAATCACAATCACAATCCAACCTTCAACTATCAATTTTCAGGCAGCAGTAATGGAGGCCGAATGGTAGGAAGTGATTTATCATTATCTCTAAATGATCATCTTCAATCGGGGCCATCTCAAGTTCTTGCAACTGCTGCAGCATCATCAGGATTCGCACCCCAGATTAGACCTTCCAAAAATTGGCTGCACAACAATGGCTTTCATTGTCTCATGAGACCCTCTTGA | 1476 | 48.64 | MWDLNDWPDVREEDECSSAKTSIEGEGEEEKGKRVGSVSNSSSSAVVVEEEEDVEVEGSDEEEPTPMVITRQFFPLEETPLPPPSSAAFPRAHWVGVKFAHPDPLAAPNNSITPTDLSHPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNPTTDSSSNLADHSLDLSLGNSSSKQNDSSNGSIGPHHSSSADWQRNQGFRPLQLNLENGGGGNKNYNNVERRNRYLESETMQLLSQTHIQSPASFEMQRHGQAQFSRPQTAVGAADQPNSQILLHNHNHNPTFNYQFSGSSNGGRMVGSDLSLSLNDHLQSGPSQVLATAAASSGFAPQIRPSKNWLHNNGFHCLMRPS | 491 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 32003930 | 32006438 | - | CrPI670011_04g013200.1 | Cre04g1320 | 495624 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g1320 | 491 | Pfam | AP2 domain | 134 | 182 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre04g1320 | 491 | Pfam | AP2 domain | 225 | 275 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre04g1320 | 491 | Gene3D | AP2/ERF domain | 225 | 284 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre04g1320 | 491 | Gene3D | AP2/ERF domain | 133 | 192 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre04g1320 | 491 | MobiDBLite | consensus disorder prediction | 105 | 134 | - | - | |
Cre04g1320 | 491 | FunFam | AP2-like ethylene-responsive transcription factor | 225 | 285 | - | - | |
Cre04g1320 | 491 | CDD | AP2 | 134 | 189 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre04g1320 | 491 | PRINTS | Ethylene responsive element binding protein signature | 227 | 238 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre04g1320 | 491 | PRINTS | Ethylene responsive element binding protein signature | 265 | 285 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre04g1320 | 491 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 40 | 355 | - | - | |
Cre04g1320 | 491 | SUPERFAMILY | DNA-binding domain | 133 | 191 | IPR016177 | GO:0003677(InterPro) | |
Cre04g1320 | 491 | CDD | AP2 | 225 | 285 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre04g1320 | 491 | SMART | rav1_2 | 134 | 196 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre04g1320 | 491 | SMART | rav1_2 | 226 | 289 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre04g1320 | 491 | FunFam | AP2-like ethylene-responsive transcription factor | 133 | 192 | - | - | |
Cre04g1320 | 491 | MobiDBLite | consensus disorder prediction | 290 | 335 | - | - | |
Cre04g1320 | 491 | ProSiteProfiles | AP2/ERF domain profile. | 226 | 283 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre04g1320 | 491 | ProSiteProfiles | AP2/ERF domain profile. | 134 | 190 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre04g1320 | 491 | SUPERFAMILY | DNA-binding domain | 225 | 285 | IPR016177 | GO:0003677(InterPro) | |
Cre04g1320 | 491 | MobiDBLite | consensus disorder prediction | 48 | 62 | - | - | |
Cre04g1320 | 491 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Cre04g1320 | 491 | MobiDBLite | consensus disorder prediction | 1 | 67 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g2381 | Cre-Chr2:37234669 | Cre04g1320 | Cre-Chr4:32003930 | 6.80E-92 | dispersed | |
Cre04g0972 | Cre-Chr4:28342347 | Cre04g1320 | Cre-Chr4:32003930 | 3.20E-85 | dispersed | |
Cre04g1320 | Cre-Chr4:32003930 | Cre10g2174 | Cre-Chr10:36291159 | 1.30E-90 | dispersed | |
Cre02g1541 | Cre-Chr2:27750047 | Cre04g1320 | Cre-Chr4:32003930 | 1.10E-130 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53466 | PF00847 | AP2 | 3.30E-10 | CL0081 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g1320 | K09284 | - | csv:101214724 | 769.229 |