Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1321 ATGGACGGCGGAGGAGAAGCTACCAGAAAAAGAGGGCTAGACAATCAGAGGCTTTACAAAGGGATAAGGATGAGGAAGTGGGGAAAGTGGGTGGCTGAGATTCGAGAGCCCAATAAGCGCTCTAGGATTTGGCTCGGCTCTTACTCTTCTCCAGTCGCCGCCGCCAGGGCCTACGATACCGCCGTTTTTTACCTCAGAGGTCCTTCCGCCAGGCTTAATTTTCCCGAGTTGTTAGCAGGGGAAGGTCGTGGAATTAGCGCCGGCGCCGGCGACATGTCGGCGGCTACTATACGGAAGAAAGCCACGGAGGTGGGTGCAAGAGTGGATGCTCTGGAGAGTTCTTTAGGGCAACACAGTCACCACAACCGGAACCATCATTCCCACGCATCGGCGTCTCCGCCAGAGACAAAAGGCTGCAGCGGGTTTTTGGATCGGGTGGATTTGAACAAATTACCCGACCCGGAGGAAGAAGATGAAGAAGGGGATGGAGAGTTCGAGTGGGAGAGAGTCGAGAGACACTGA 522 54.98 MDGGGEATRKRGLDNQRLYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFYLRGPSARLNFPELLAGEGRGISAGAGDMSAATIRKKATEVGARVDALESSLGQHSHHNRNHHSHASASPPETKGCSGFLDRVDLNKLPDPEEEDEEGDGEFEWERVERH 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32028340 32028861 - CrPI670011_04g013210.1 Cre04g1321 495625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1321 173 CDD AP2 19 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1321 173 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1321 173 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 12 160 - -
Cre04g1321 173 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Cre04g1321 173 MobiDBLite consensus disorder prediction 114 173 - -
Cre04g1321 173 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1321 173 SMART rav1_2 18 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1321 173 Pfam AP2 domain 19 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1321 173 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677(InterPro)
Cre04g1321 173 PRINTS Ethylene responsive element binding protein signature 57 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1321 173 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1321 Cre-Chr4:32028340 Cre08g0097 Cre-Chr8:2118342 3.20E-20 dispersed
Cre02g1539 Cre-Chr2:27713430 Cre04g1321 Cre-Chr4:32028340 2.60E-42 wgd
Cre04g1321 Cre-Chr4:32028340 Cre05g2198 Cre-Chr5:33703466 1.80E-39 wgd
Cre04g1321 Cre-Chr4:32028340 Cre08g1555 Cre-Chr8:28203138 2.30E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53467 PF00847 AP2 2.30E-11 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1321 K09286 - csv:101214481 292.737