Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1323 ATGAACCCTAACCACCCCACATTTCTCTCTTCCCTTCCACTTTTCTGTTCTGTTGTACTGTTTTCTCTCTCCGCTTCTGCCGCCTCTGGATTGGCCTTTCAAATTTCGCCGGAAGACTTACTGCTGCCCTCCGACGCCATTTCTCTTCTTTCCTTCAAGTCCAAAGCCGATTTGAACAACAAGCTTCTTTACACTCTCAACGAGCGCTTTGATTACTGTCAATGGCAGGGCGTGAAGTGTGTACAGGGTCGTGTTGTTCGACTGGTTCTTCAGTCGTTTGGTCTCCGAGGGACATTGGCTCCAAATACAGTGTCTCAGCTCGACCAGCTTCGGATCCTCAGCCTGCATAATAACTCCCTCGAAGGACCCATCCCTGACCTATCTAGACTCTTCAATCTTAAATCTCTGTTCCTTGGCCGAAACTCCTTCGTTGGGTCTTTTCCGCCGTCGATTCTCACTCTTCACCGGCTTCAGACTCTTGATCTTTCCTATAACAACTTTACTGGTCCGCTCCCGACGAGGCTTTCCTCGTTGGACCGACTCATTACTCTTAGGCTTGAATGGAATGGTTTCAATGGAAGTATTCCTCCCTTAAATCAGTCATTCCTTGAGGTCTTCAATGTCACGGGGAACAACCTGACCGGCCAAATTCCAGTTACCCCCACTCTGTCACGTTTTAACACGTCGTCATTTTTCTGGAACCCAAATCTCTGTGGCGAGATCGTTAACAAGGCATGTCGTTCACCCACTCCATTCTTTGAAGCTTCCAATGCCACTCCGCCATCTATCCCTTCCGTCCAAAGTGCACAATCACAGGACGTACTTCTCTCTCCTGTTACTCATGTTAAGCACAAGGAAACCGGTATGATTTTGGGGCTTTCAGTCGGCACTGTAGTTTTAATAGTCGGTGTTTTATGTTTCTATGTAGCTACCAGAACCCAGAGAAGTCAAACTGCGTCGAAGCCGGCAATGCCGCAATTCGAAACCGACGCTACTTTTTCCACAGCTTCCGCAATTAACAACCGAGTCGAGGGGAAAGGCGAATTTCAAGCCAAAATGAAAGAAAGTGAAGAAATCCCAAAAGCCCAGAAGAGTGGTAATCTTATATTTTGTGAAGGGGAAGCAGAATTATTCAACTTAGAGCAGTTAATGAAGGCTTCGGCCGAATTGCTCGGTAGAGGCACAATGGGAACTACATACAAAGCAGTGCTCTGCAACCAGCTCATCATAACGGTGAAGCGTCTTGATGCTAATAAGACCGCCGCGACGAGCAACGAAGTGTTCGACCGACATTTGGGAGCACTGGGTGCGCTTCATCACCCTAATTTGGTACCAGTTAGGGCATACTTCCAATCGAAGGGAGAGAGATTAGTGGTGTACGATTACCAACCTAATGGCAGTCTTTACAACCTCATTCACGGTTCAAGATCAGCGAGGGCTAAGCCTTTGCATTGGACGTCATGCTTGAAGATTGCAGAAGATTTAGCTCAGGGCATTGCCTATATACATCAAGCCTCGAATTTAATCCATGGCAACTTAAAGTCTTCTAATGTGCTCCTTGGTGCAGAGTTTGAGGCTTGTCTCACAGACTATGGGCTTTCTGCTCTGGCAGAGGCCTATGAAGATCCAGATTGTTCACGCTACCAAGCCCCTGAAACTCGCAAGTCGAGCCGGAACGCGACCCAGAAGAGCGATGTCTATGCCTTCGGCGTCCTTTTGCTGGAACTTTTGACAGGAAGACATCCTGCACACCATCCATTTCTTGAGCCAACTGACATGCCAGAATGGGTGAGAGTAGTTAGGGAAGATGATGGTGGGGATAGTAACCAACTTGGAATGCTTACTGAGGTGGCTAGCATCTGCAGTACTACATCCCCTGAACAGAGGCCGGCCATGTGGCAAGTTTTGAAAATGATACTGGAGATTAAGGAGAGTGTCATGACAGAGGACAGTGAATCTAGTGGCTTTTAA 1971 47.64 MNPNHPTFLSSLPLFCSVVLFSLSASAASGLAFQISPEDLLLPSDAISLLSFKSKADLNNKLLYTLNERFDYCQWQGVKCVQGRVVRLVLQSFGLRGTLAPNTVSQLDQLRILSLHNNSLEGPIPDLSRLFNLKSLFLGRNSFVGSFPPSILTLHRLQTLDLSYNNFTGPLPTRLSSLDRLITLRLEWNGFNGSIPPLNQSFLEVFNVTGNNLTGQIPVTPTLSRFNTSSFFWNPNLCGEIVNKACRSPTPFFEASNATPPSIPSVQSAQSQDVLLSPVTHVKHKETGMILGLSVGTVVLIVGVLCFYVATRTQRSQTASKPAMPQFETDATFSTASAINNRVEGKGEFQAKMKESEEIPKAQKSGNLIFCEGEAELFNLEQLMKASAELLGRGTMGTTYKAVLCNQLIITVKRLDANKTAATSNEVFDRHLGALGALHHPNLVPVRAYFQSKGERLVVYDYQPNGSLYNLIHGSRSARAKPLHWTSCLKIAEDLAQGIAYIHQASNLIHGNLKSSNVLLGAEFEACLTDYGLSALAEAYEDPDCSRYQAPETRKSSRNATQKSDVYAFGVLLLELLTGRHPAHHPFLEPTDMPEWVRVVREDDGGDSNQLGMLTEVASICSTTSPEQRPAMWQVLKMILEIKESVMTEDSESSGF 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32050929 32053904 - CrPI670011_04g013230.1 Cre04g1323 495627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1323 656 Gene3D Ribonuclease Inhibitor 201 246 IPR032675 -
Cre04g1323 656 ProSiteProfiles Leucine-rich repeat profile. 109 131 IPR001611 GO:0005515(InterPro)
Cre04g1323 656 Gene3D Transferase(Phosphotransferase) domain 1 464 654 - -
Cre04g1323 656 FunFam Probable inactive receptor kinase At5g67200 44 154 - -
Cre04g1323 656 SUPERFAMILY L domain-like 49 239 - -
Cre04g1323 656 Gene3D Ribonuclease Inhibitor 43 200 IPR032675 -
Cre04g1323 656 Gene3D Phosphorylase Kinase; domain 1 349 462 - -
Cre04g1323 656 Pfam Leucine Rich Repeat 109 126 IPR001611 GO:0005515(InterPro)
Cre04g1323 656 Pfam Leucine Rich Repeat 156 178 IPR001611 GO:0005515(InterPro)
Cre04g1323 656 FunFam Leucine-rich repeat receptor-like protein kinase 156 248 - -
Cre04g1323 656 Pfam Protein tyrosine and serine/threonine kinase 389 637 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1323 656 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 44 648 IPR046959 -
Cre04g1323 656 ProSiteProfiles Protein kinase domain profile. 385 647 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1323 656 SUPERFAMILY Protein kinase-like (PK-like) 389 643 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1323 Cre-Chr4:32050929 Cre10g2058 Cre-Chr10:35281270 1.40E-71 dispersed
Cre06g1350 Cre-Chr6:7592486 Cre04g1323 Cre-Chr4:32050929 5.80E-09 transposed
Cre07g1071 Cre-Chr7:16049468 Cre04g1323 Cre-Chr4:32050929 2.70E-106 transposed
Cre04g1323 Cre-Chr4:32050929 Cre06g2581 Cre-Chr6:33503338 9.50E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64059 PF00069 Pkinase 2.60E-30 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1323 - - - 0.0