Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1325 ATGGCTGTGGAGATCAAGTCCCACCCTTACCCACTCCTCACTATGGAAGCCAACGCCGTCCAAGAAGCCACTTCCGGCCTCGAAAGCGTCGAGAAGCTCATCCGATTACTTTCTTCTAATGCAAATGCCCCTCAACCTCACTCCTTACCCTCCTCCACTCAATCCCCCATCGATTTCCCCACCGACTGCCGCGCCGCCGCCGATGTAGCCGTTTCCAAGTTCAAAAAGGTTATTTCTCTCCTCGGCCGTAGCCGCCTCGGCCACGCTCGTTTCAGGAGAGCTCCTCTGCCTCAACAATCTCACTACGCTACTCCCGTACAGCAGATCCCACCCCATCCCCACCTTGACAACAACCACAACAATAACAACGACTCTGTTAATTTCTCCGCCCATAATTCCTTCATTTCCTCGTTGACCGGCGACGCCGACACCAAGCATCCTTCTTCCTCTTCCTCACCTTTTCTCATTACCAACCTCTCCCAAGTCTCCTCCGTTGGGAAACCACCTCTTTCTACTTCTTCCCTTAAGAGGAAGTGCAGCTCAGATAACTTGGGATCCGGCAAGTGCGCCGCTGCTTCTTCCTCTGCCCGATGTCACTGTTCCAAGAAGAGAAAACTGAGGGTGAAGAGGGTGGTGAGAGTTCCGGCGATAAGCTTGAAAATGGCGGATATCCCACCGGACGATTATTCATGGCGGAAATATGGTCAAAAGCCCATTAAAGGCTCTCCACATCCCAGGGGTTATTACAAGTGTAGCAGTGTGAGAGGTTGCCCAGCCCGGAAACACGTAGAACGGGCCGTAGACGATCCGACGATGCTAGTGGTGACTTACGAAGGAGAGCACAATCACACACTCTCTGTGCCCGAAACCTCCAGTCTCATCCTCGAGTCCTCTTAG 897 53.07 MAVEIKSHPYPLLTMEANAVQEATSGLESVEKLIRLLSSNANAPQPHSLPSSTQSPIDFPTDCRAAADVAVSKFKKVISLLGRSRLGHARFRRAPLPQQSHYATPVQQIPPHPHLDNNHNNNNDSVNFSAHNSFISSLTGDADTKHPSSSSSPFLITNLSQVSSVGKPPLSTSSLKRKCSSDNLGSGKCAAASSSARCHCSKKRKLRVKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAVDDPTMLVVTYEGEHNHTLSVPETSSLILESS 298
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 32071065 32072169 - CrPI670011_04g013250.1 Cre04g1325 495629
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1325 298 MobiDBLite consensus disorder prediction 163 190 - -
Cre04g1325 298 SUPERFAMILY WRKY DNA-binding domain 222 284 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g1325 298 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 20 286 IPR044810 GO:0003700(InterPro)
Cre04g1325 298 FunFam WRKY transcription factor 65 209 286 - -
Cre04g1325 298 Pfam WRKY DNA -binding domain 227 283 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g1325 298 Pfam Plant zinc cluster domain 176 223 IPR018872 -
Cre04g1325 298 ProSiteProfiles WRKY domain profile. 220 286 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g1325 298 SMART WRKY_cls 225 285 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g1325 298 Gene3D WRKY domain 209 286 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g1325 298 MobiDBLite consensus disorder prediction 104 128 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1325 Cre-Chr4:32071065 Cre05g2813 Cre-Chr5:38847898 1.40E-52 dispersed
Cre02g1125 Cre-Chr2:10047212 Cre04g1325 Cre-Chr4:32071065 8.10E-85 transposed
Cre04g1325 Cre-Chr4:32071065 Cre05g2205 Cre-Chr5:33756245 2.80E-72 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53468 PF03106 WRKY 3.80E-26 CL0274 Cre TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1325 - - - 0.0