Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g1325 | ATGGCTGTGGAGATCAAGTCCCACCCTTACCCACTCCTCACTATGGAAGCCAACGCCGTCCAAGAAGCCACTTCCGGCCTCGAAAGCGTCGAGAAGCTCATCCGATTACTTTCTTCTAATGCAAATGCCCCTCAACCTCACTCCTTACCCTCCTCCACTCAATCCCCCATCGATTTCCCCACCGACTGCCGCGCCGCCGCCGATGTAGCCGTTTCCAAGTTCAAAAAGGTTATTTCTCTCCTCGGCCGTAGCCGCCTCGGCCACGCTCGTTTCAGGAGAGCTCCTCTGCCTCAACAATCTCACTACGCTACTCCCGTACAGCAGATCCCACCCCATCCCCACCTTGACAACAACCACAACAATAACAACGACTCTGTTAATTTCTCCGCCCATAATTCCTTCATTTCCTCGTTGACCGGCGACGCCGACACCAAGCATCCTTCTTCCTCTTCCTCACCTTTTCTCATTACCAACCTCTCCCAAGTCTCCTCCGTTGGGAAACCACCTCTTTCTACTTCTTCCCTTAAGAGGAAGTGCAGCTCAGATAACTTGGGATCCGGCAAGTGCGCCGCTGCTTCTTCCTCTGCCCGATGTCACTGTTCCAAGAAGAGAAAACTGAGGGTGAAGAGGGTGGTGAGAGTTCCGGCGATAAGCTTGAAAATGGCGGATATCCCACCGGACGATTATTCATGGCGGAAATATGGTCAAAAGCCCATTAAAGGCTCTCCACATCCCAGGGGTTATTACAAGTGTAGCAGTGTGAGAGGTTGCCCAGCCCGGAAACACGTAGAACGGGCCGTAGACGATCCGACGATGCTAGTGGTGACTTACGAAGGAGAGCACAATCACACACTCTCTGTGCCCGAAACCTCCAGTCTCATCCTCGAGTCCTCTTAG | 897 | 53.07 | MAVEIKSHPYPLLTMEANAVQEATSGLESVEKLIRLLSSNANAPQPHSLPSSTQSPIDFPTDCRAAADVAVSKFKKVISLLGRSRLGHARFRRAPLPQQSHYATPVQQIPPHPHLDNNHNNNNDSVNFSAHNSFISSLTGDADTKHPSSSSSPFLITNLSQVSSVGKPPLSTSSLKRKCSSDNLGSGKCAAASSSARCHCSKKRKLRVKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAVDDPTMLVVTYEGEHNHTLSVPETSSLILESS | 298 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 32071065 | 32072169 | - | CrPI670011_04g013250.1 | Cre04g1325 | 495629 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g1325 | 298 | MobiDBLite | consensus disorder prediction | 163 | 190 | - | - | |
Cre04g1325 | 298 | SUPERFAMILY | WRKY DNA-binding domain | 222 | 284 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre04g1325 | 298 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 20 | 286 | IPR044810 | GO:0003700(InterPro) | |
Cre04g1325 | 298 | FunFam | WRKY transcription factor 65 | 209 | 286 | - | - | |
Cre04g1325 | 298 | Pfam | WRKY DNA -binding domain | 227 | 283 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre04g1325 | 298 | Pfam | Plant zinc cluster domain | 176 | 223 | IPR018872 | - | |
Cre04g1325 | 298 | ProSiteProfiles | WRKY domain profile. | 220 | 286 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre04g1325 | 298 | SMART | WRKY_cls | 225 | 285 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre04g1325 | 298 | Gene3D | WRKY domain | 209 | 286 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre04g1325 | 298 | MobiDBLite | consensus disorder prediction | 104 | 128 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g1325 | Cre-Chr4:32071065 | Cre05g2813 | Cre-Chr5:38847898 | 1.40E-52 | dispersed | |
Cre02g1125 | Cre-Chr2:10047212 | Cre04g1325 | Cre-Chr4:32071065 | 8.10E-85 | transposed | |
Cre04g1325 | Cre-Chr4:32071065 | Cre05g2205 | Cre-Chr5:33756245 | 2.80E-72 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53468 | PF03106 | WRKY | 3.80E-26 | CL0274 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g1325 | - | - | - | 0.0 |