Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1330 ATGAATAAACTCAGTTGGGAATTGAATTACATCATCCATCCAAACAGATTAAACAAACGTGAAATTAGCCAATCGATCGCCAATTTTATCAAAGTTCTTCACGCCCTACACGACCTTCGCGGAGATCTTAACTGGACGCGCCATCTTCTTCGCTTCCTTTCCTTCCCAATCATTGGTTCCATGAGATCGAGCCCAAGTTTTCTATTCGTCGCTGATAGTAAAGCAACAAACCTGATTCATTTGTATGATAAAATGGATAATGGAACTTCTAATAGTTCAACTCAATCTCCAGTCACCAATTCAGCTCCAATAGTTGATAGCCAAAGTAGTAAAGGAGATAATTTCACATCTATTTTATCTTCGTCTGGAATATCATCTTGGGCTAAGAGTTTCAGAAATCCACAACCACCTGAAGCAGCAGAAAATGACTCCAAAGCAGGAAATTCTGGGATGTCAGCAATTGCTCGTTTCAGTAGTGGTTTTGGACTCCGGATACCTGCGATGTCTCCTGTACAAAGTGATGGTGCTGCAGATACCAAACCAGCAATGCAATCTGGTGTTTTTGAATCACTCACAAAAGGTTTAGTTGACACATCTCAGAATGCAGTAAAGGCTATGCAGGTAAAAGCACGTCATATTGTCTCTCAGAACAAGCGAAGATATCAGGAAGGAGAATTTGATTTGGATATGACATATATCACCGAAAACATAATTGCTATGGGGTTTCCTGCTGGTCACATGAGCTCTGGTTTTTTCGGATTCCTTGAGGGATTTTACAGAAACCATATGGAGGAAGTGATCAAATTTTTTGAAACTCATCATAAGGGAAAATACAAAGTTTACAATCTTTGCTCAGAGCGTTTGTATGATGCCGCATTATTTGAGGGGAAGGTTGCACATTTCCCGTTTGATGATCATAATTGTCCTCCTATCCATCTCACAAAATCATTTTGTCAAAGTGCATATGCATGGTTAAAGGAGGATATTGAGAATGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCAAGAACAGGGCTAATGATTTGCAGCCTCCTTTTATTCCTAAAGTTCTTCCAAACATCAGCAGAGGCGATTGACTATTATAATCAGAAAAGATGCGTGGATGGGAAGGCTTTGGTTCTTCCTAGCCAGATTAGGTATGTCAAGTATTTTGAGCGGATTTTAACACATTTCAACGGAAATACTCCACCAGGACGGAGGTGCATGCTGAGAGGTTTTCGGCTTCACAAGTGCCCGTATTGGGTTAGGCCTTCCATTACGATATCAAATCACAGTGAGATTTTGTTCTCAACAAGAAAGCATCCAAAGACAAAGGATTTAATGCCAGAAGATTTCTGGATTAGGGCACCAAAGAAAGGATTTGTAGTCTTTGCACTGCCAGGTGAGCCTGGTTTGACAGAGTTGTCTGGGGACTTCAAGATTCATTTTCATGACCGGCATGGAGACTTTTACTGTTGGTTAAATACAACAATGACAGAAAACAAAATATTATTAAGTGACACGGATCTTGATGGTTTCGATAAGAGAAAACTTCCAACCCCTGGATTTCAAGTCGAAGTTGTGATGATAGACTATGATGGTTCTTTGCCAACACGATTGAAAACTGATTCAACTAGCAAAGGATCTGATCGTCGCTCTATTCATGATCGAGCATCAGGTAATGAAGCAGCACAATCCAACACAAACAAAATTTCCGGAGGTGAAGAAAATGATGACGACGTATTCTCTGATAGTGATGAAGAAAATGGTGACGTAAAAACCAGTCTAGCTCAATCAACTTCTGGAACTGGAAATGGAACTTCAAAAGCTGATCATTCATCAACAACAATTGCCTCCGGAAGAATTGGGAGTTTAGCGCATGACACTAGTTGTTTGACCCTCGGAAATGAGAAAAACTCACAACCTAATGCTCCAAAAGATCCTGCCGTAATACAACCATCAGCCCTTGAGATCCCAAATTTGGATTTAGCAAGGGCAAGTGATTTCAAGGCAATAGCCGCTGATGCGTCAGTCTTCACATTTGGGGATGAAGAAGACTTTGATAGTGAATGA 2073 40.52 MNKLSWELNYIIHPNRLNKREISQSIANFIKVLHALHDLRGDLNWTRHLLRFLSFPIIGSMRSSPSFLFVADSKATNLIHLYDKMDNGTSNSSTQSPVTNSAPIVDSQSSKGDNFTSILSSSGISSWAKSFRNPQPPEAAENDSKAGNSGMSAIARFSSGFGLRIPAMSPVQSDGAADTKPAMQSGVFESLTKGLVDTSQNAVKAMQVKARHIVSQNKRRYQEGEFDLDMTYITENIIAMGFPAGHMSSGFFGFLEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFEGKVAHFPFDDHNCPPIHLTKSFCQSAYAWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFQTSAEAIDYYNQKRCVDGKALVLPSQIRYVKYFERILTHFNGNTPPGRRCMLRGFRLHKCPYWVRPSITISNHSEILFSTRKHPKTKDLMPEDFWIRAPKKGFVVFALPGEPGLTELSGDFKIHFHDRHGDFYCWLNTTMTENKILLSDTDLDGFDKRKLPTPGFQVEVVMIDYDGSLPTRLKTDSTSKGSDRRSIHDRASGNEAAQSNTNKISGGEENDDDVFSDSDEENGDVKTSLAQSTSGTGNGTSKADHSSTTIASGRIGSLAHDTSCLTLGNEKNSQPNAPKDPAVIQPSALEIPNLDLARASDFKAIAADASVFTFGDEEDFDSE 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32115620 32120904 + CrPI670011_04g013300.1 Cre04g1330 495634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1330 690 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 232 399 IPR029021 -
Cre04g1330 690 MobiDBLite consensus disorder prediction 128 147 - -
Cre04g1330 690 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 333 372 IPR000387 GO:0016311(InterPro)
Cre04g1330 690 MobiDBLite consensus disorder prediction 592 622 - -
Cre04g1330 690 Gene3D Protein tyrosine phosphatase superfamily 204 401 IPR029021 -
Cre04g1330 690 ProSiteProfiles C2 tensin-type domain profile. 405 532 IPR014020 -
Cre04g1330 690 Pfam PTEN2, C2 domain 405 533 - -
Cre04g1330 690 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 206 609 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Cre04g1330 690 SMART PTEN_C2_2 403 531 IPR014020 -
Cre04g1330 690 MobiDBLite consensus disorder prediction 538 622 - -
Cre04g1330 690 CDD PTP_PTEN 229 394 IPR045101 GO:0016791(InterPro)
Cre04g1330 690 MobiDBLite consensus disorder prediction 544 558 - -
Cre04g1330 690 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 204 401 - -
Cre04g1330 690 MobiDBLite consensus disorder prediction 89 113 - -
Cre04g1330 690 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 297 353 - -
Cre04g1330 690 ProSitePatterns Tyrosine specific protein phosphatases active site. 335 345 IPR016130 GO:0016311(InterPro)
Cre04g1330 690 ProSiteProfiles Phosphatase tensin-type domain profile. 219 398 IPR029023 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1330 Cre-Chr4:32115620 Cre10g1677 Cre-Chr10:30991356 1.90E-39 dispersed
Cre02g0980 Cre-Chr2:7185701 Cre04g1330 Cre-Chr4:32115620 1.40E-202 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1330 K01110 - csv:101213277 1108.2