Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1365 ATGATGCAATTCAGCGAGACACCCCCACGGTTGCACCAAACGACCACTACTACTACAAGGATTATTCCTCCTTCATTTCCAGAGATGTCGATGAATAATAAAAACCAAATTACAACAACGGGGCAGTTTCGAAGTAGGCGGCCATGGCCTGGTTTATTTCCTTGTTCATCCAAAGCTTTAGGGACTTGCTTGGGAGATGCCAATTGTATGGAACAATTGTTAGTTCATTGTGCCAACGCCATTGAAACCAACGACGCTACTCTCGCCCAACAAATCCTTTGGGTTCTTAACAACATTGCCCCTCCTGATGGCGATTCCAACCAACGCCTCACTTCCGCTTTCCTACGCGCTCTCGTCACACGCGCCACCAACACCGGCAACTGCAAGATCCTAGCCGCTATCACCACCGCATTCTCCTCCTCACTCACCACACACACCTTCTCCCTTATGGACTTCGCCGCCTTCGTCGACTTAACCCCCTGGCACCGCTTCGGCTTCACCGCCGCCAATGTCGCCATTCTCGACGCCGTCGAGGGTTACTCCGTCGTACATGTCGTGGATTTCAGCTTAATGCATTGCATGCAAATCCCTACTTTAATCGACGCCATTGCTACACGATTTGAGGTTCCTCCGTTGTTGAAACTCACGACTGTAGCTGTTGTTGCCGTTAAAGACGCATCGCCTATGCTGGAGCTTTCGTACGACGAATTAGGTGCGAAATTAGTGAACTTCGCCAGGTCTAAAAACGTGACTATGGAATTTAGAGTGGTCCCGTCTTGTCATACAGACGGTTTCGCCAGTTTAATTGAACAAATCCGAATGCAAAATTTAATTTACGGACCTGAAAATAACGAAGCACTCGTTTTTAATTGTCACATGATGCTTCATTACATCCCTGAAGAAACATTAAACCCAAACCCATCTCCCAATTTCGACATGTCGTCCACTTCAGTTCGTTCCATGTTTCTCAAGGCAATCCGTAGTTTAGACCCAACGATTGTGGTATTAGTAGACGAAGATGCGGATTTCACTTCAAGCAAATTGGTTACACGATTGAGATCGGCGTTTAATTACCTATGGATTCCTTACGACTCCATGGATTCGTTTCTTCCGAGAAGCAGCAAGCAGAGGGAATGGTATGAAGCCGACATTTGTTGGAAGATTGAGAATGTAATTGCACAGGAAGGGATTCAACGAGTTCAAAGATTGGAACCGAAGGGACGGTGGGTTCAACGGATGGTGAACGCCAAATTCCGAGGGGTTCCGTTTGGAGACGACGCCGTTACGGAGGTGAAGGCGATGCTTGACGAGCATGCAGCGGGATGGGGGTTGAAGAAAGAAGAGGACCACCTGCTGCTCACGTGGAAAGGGCACGACGTCGTTTTCGCTACTGCTTGGGTACCTTGCTAA 1410 48.16 MMQFSETPPRLHQTTTTTTRIIPPSFPEMSMNNKNQITTTGQFRSRRPWPGLFPCSSKALGTCLGDANCMEQLLVHCANAIETNDATLAQQILWVLNNIAPPDGDSNQRLTSAFLRALVTRATNTGNCKILAAITTAFSSSLTTHTFSLMDFAAFVDLTPWHRFGFTAANVAILDAVEGYSVVHVVDFSLMHCMQIPTLIDAIATRFEVPPLLKLTTVAVVAVKDASPMLELSYDELGAKLVNFARSKNVTMEFRVVPSCHTDGFASLIEQIRMQNLIYGPENNEALVFNCHMMLHYIPEETLNPNPSPNFDMSSTSVRSMFLKAIRSLDPTIVVLVDEDADFTSSKLVTRLRSAFNYLWIPYDSMDSFLPRSSKQREWYEADICWKIENVIAQEGIQRVQRLEPKGRWVQRMVNAKFRGVPFGDDAVTEVKAMLDEHAAGWGLKKEEDHLLLTWKGHDVVFATAWVPC 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32480482 32481891 - CrPI670011_04g013650.1 Cre04g1365 495669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1365 469 Pfam GRAS domain family 70 466 IPR005202 -
Cre04g1365 469 ProSiteProfiles GRAS family profile. 61 467 IPR005202 -
Cre04g1365 469 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 66 466 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0494 Cre-Chr2:2100628 Cre04g1365 Cre-Chr4:32480482 1.50E-95 dispersed
Cre04g1365 Cre-Chr4:32480482 Cre04g1376 Cre-Chr4:32593805 7.30E-43 dispersed
Cre04g1365 Cre-Chr4:32480482 Cre03g0450 Cre-Chr3:2911442 5.20E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53470 PF03514 GRAS 1.10E-91 CL0063 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1365 - - - 0.0