Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g1366 | ATGAGTTGCAACGGTTGCCGTGTTCTTCGTAAGGGCTGCAGCGAATCCTGTATTCTTCGCCCTTGTTTGCAGTGGATTGACACCGCCGAAGCTCAAGGTCACGCTACTGTCTTTGTCGCTAAGTTCTTCGGCCGCGCCGGCCTCATGTCCTTCATCTCCGCCGTCCCTGAATCTCAGCGACCTTCTTTGTTTCAGTCTTTGTTGTTCGAAGCCTGCGGACGCACCGTCAATCCCGTCAACGGCGCCGTTGGTCTTCTCTGGACTGGCAACTGGCACGTTTGTCAGGCCGCCGTCGACACCGTCCTACGAGGCGGCACTTTGCGGCCAATCAATGATTTCCTTGCTGCTGGATCCCCCAATCTAGCCTCCGACGACACTTCCGAGGCTGAAGTAGGCTGTACCGACATGTGGAAGATACGAGATTCTTATCCCAATTCTCGATTCTCCAACTCTCGATCCAGGCTCTCACCAAAACGCAAACGATCCGAGGAATCATCTCCCAAACACCAACTGAATGACCTAGATCTCCGCTTGACGCCCACTTTTCCAGCCAAATCAACCCTGCGCGCGGCTACTCCATCCATGAATTCCGAGGAATCCGAGACCACAACGTGCTTCGAGAGCGGCCTTGGGGATAATCATCATCAACATCAATACTATCCAGAAGAAGGAACTACCCAACGGAAACTTCTCAATTTGTTCGTCTAA | 708 | 52.97 | MSCNGCRVLRKGCSESCILRPCLQWIDTAEAQGHATVFVAKFFGRAGLMSFISAVPESQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVDTVLRGGTLRPINDFLAAGSPNLASDDTSEAEVGCTDMWKIRDSYPNSRFSNSRSRLSPKRKRSEESSPKHQLNDLDLRLTPTFPAKSTLRAATPSMNSEESETTTCFESGLGDNHHQHQYYPEEGTTQRKLLNLFV | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 32499448 | 32500247 | - | CrPI670011_04g013660.1 | Cre04g1366 | 495670 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g1366 | 235 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 234 | - | GO:0010468(PANTHER) | |
Cre04g1366 | 235 | Pfam | Lateral organ boundaries (LOB) domain | 2 | 100 | IPR004883 | - | |
Cre04g1366 | 235 | ProSiteProfiles | LOB domain profile. | 1 | 107 | IPR004883 | - | |
Cre04g1366 | 235 | MobiDBLite | consensus disorder prediction | 156 | 171 | - | - | |
Cre04g1366 | 235 | MobiDBLite | consensus disorder prediction | 185 | 211 | - | - | |
Cre04g1366 | 235 | MobiDBLite | consensus disorder prediction | 146 | 218 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g1366 | Cre-Chr4:32499448 | Cre05g2235 | Cre-Chr5:33959300 | 4.70E-51 | dispersed | |
Cre04g1366 | Cre-Chr4:32499448 | Cre06g2350 | Cre-Chr6:31443051 | 3.40E-41 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53471 | PF03195 | LOB | 4.00E-25 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g1366 | - | - | - | 0.0 |