Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1366 ATGAGTTGCAACGGTTGCCGTGTTCTTCGTAAGGGCTGCAGCGAATCCTGTATTCTTCGCCCTTGTTTGCAGTGGATTGACACCGCCGAAGCTCAAGGTCACGCTACTGTCTTTGTCGCTAAGTTCTTCGGCCGCGCCGGCCTCATGTCCTTCATCTCCGCCGTCCCTGAATCTCAGCGACCTTCTTTGTTTCAGTCTTTGTTGTTCGAAGCCTGCGGACGCACCGTCAATCCCGTCAACGGCGCCGTTGGTCTTCTCTGGACTGGCAACTGGCACGTTTGTCAGGCCGCCGTCGACACCGTCCTACGAGGCGGCACTTTGCGGCCAATCAATGATTTCCTTGCTGCTGGATCCCCCAATCTAGCCTCCGACGACACTTCCGAGGCTGAAGTAGGCTGTACCGACATGTGGAAGATACGAGATTCTTATCCCAATTCTCGATTCTCCAACTCTCGATCCAGGCTCTCACCAAAACGCAAACGATCCGAGGAATCATCTCCCAAACACCAACTGAATGACCTAGATCTCCGCTTGACGCCCACTTTTCCAGCCAAATCAACCCTGCGCGCGGCTACTCCATCCATGAATTCCGAGGAATCCGAGACCACAACGTGCTTCGAGAGCGGCCTTGGGGATAATCATCATCAACATCAATACTATCCAGAAGAAGGAACTACCCAACGGAAACTTCTCAATTTGTTCGTCTAA 708 52.97 MSCNGCRVLRKGCSESCILRPCLQWIDTAEAQGHATVFVAKFFGRAGLMSFISAVPESQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVDTVLRGGTLRPINDFLAAGSPNLASDDTSEAEVGCTDMWKIRDSYPNSRFSNSRSRLSPKRKRSEESSPKHQLNDLDLRLTPTFPAKSTLRAATPSMNSEESETTTCFESGLGDNHHQHQYYPEEGTTQRKLLNLFV 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32499448 32500247 - CrPI670011_04g013660.1 Cre04g1366 495670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1366 235 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 234 - GO:0010468(PANTHER)
Cre04g1366 235 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Cre04g1366 235 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Cre04g1366 235 MobiDBLite consensus disorder prediction 156 171 - -
Cre04g1366 235 MobiDBLite consensus disorder prediction 185 211 - -
Cre04g1366 235 MobiDBLite consensus disorder prediction 146 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1366 Cre-Chr4:32499448 Cre05g2235 Cre-Chr5:33959300 4.70E-51 dispersed
Cre04g1366 Cre-Chr4:32499448 Cre06g2350 Cre-Chr6:31443051 3.40E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53471 PF03195 LOB 4.00E-25 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1366 - - - 0.0