Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1376 ATGGATACCTTGTTTCGGCTTGTCAATCTTCAATCTGAACAATCTTACAATTCCAGTAGAACTAATTCTAGCAGCTCTAGATCTTCTAGACAAAACCAATATCATCATTACCATCAACAGGATCAAGACGAAGAATGCTACAATCTTCTCATGGATGAGGAAGATTTCTCATCGTCTAGTAATTCTAGACAATATTATAATCCATACCATCCTCACCCACCTTCTACGGCTACTCCCACCACCACCGCCACCGCCTCCACCACTCCGACTCCGATAGATCAATTCTCATTCGTTTCCCCTTCACCGGATTTCAACTTCGAATTTTCCGGGAGGTGGGCCCCTGATATTCTCCTTGAAACCGCTAGGGCTATTTCTGACAGGAACAGCGCCCGCGTTCAGCAACTCATGTGGATGCTAAACGAACTTAGCTCTCCCTATGGAGATACGGATCAAAAGCTGGCTGCCTATTTCCTGCAGGCTTTGTTTAGCCGTATGACAGATTCCGGCGACCGTAATTACCGCGCTTTGGCCTCCGCTTCAGAGAAAACATGCTCATTCGAATCAACTAGGAAAGTGATGCTCAAGTTTCAGGAGGTTAGCCCCTGGACCACTTTTGGCCATGTTTCTTGTAATGGCGCATTAATTGAAGCCTTAGAAGGCGAATCAAAGCTACATATAATCGATATCAGCAACACCTATTGCACTCAATGGCCTACTTTGCTTGAAGCTCTTGCAACTCGTACGGACGACACGCCGCACCTCCGCCTCACCACGGTGGTTACCACCAAGCCAAGCGGTGGGACCGGAGTAGCCGCGTCTCAAAAAGTAATGAAAGAAATAGGTACAAGAATGGAAAAGTTCGCTAGGCTTATGGGCGTACCTTTTAAATTCAATGCGCTGTACCATTCCGGTGACCTTTCGGAACTGGACTTAACCAAATTAGACATTAAAGAAGACGAAGCACTTGCCGTTAACTGCGTCGGAGCCTTACGTTCCGTGACGGCGATTAACAACCGTCGAGATTTCTTGATTTCGTCTTTCCGCAGTTTACGGCCACGGATTATCACGGTGATAGAAGAGGAAGCCGATCTCGACGTTGGCGTCGATGGTATTGAATTTATGAGAGGGTTTCAAGAATGTTTGCGGTGGTTTAGGGTTTACTTCGAGACATTGGATGAGAGTTTCTCAAGGACGAGCAACGAACGGTTGATGCTCGAGAGAGCGGCCGGTAGGGCAATCGTGGACCTAGTGGCTTGCTCGGCGGCGGACTCGGTTGAGAGGCGGGAATCGGCGGCGCGGTGGGCTCAGCGGCTGCATGGAAACGGATTCGGTCCGGTGACGTTCAGCGATGAAGTGTGCGACGACGTTAGGGCGCTGTTGAGGAGATACAAGGAAGGATGGGCAATGACACAGAGCTCCGACGTCGCCGGAATATTCTTGACGTGGAAAGAGCAACCGGTGGTGTGGGCCAGTGCATGGAGACCTTGA 1488 49.4 MDTLFRLVNLQSEQSYNSSRTNSSSSRSSRQNQYHHYHQQDQDEECYNLLMDEEDFSSSSNSRQYYNPYHPHPPSTATPTTTATASTTPTPIDQFSFVSPSPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALASASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTTKPSGGTGVAASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGDLSELDLTKLDIKEDEALAVNCVGALRSVTAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVACSAADSVERRESAARWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWRP 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32593805 32595292 - CrPI670011_04g013760.1 Cre04g1376 495680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1376 495 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 64 493 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0045930(PANTHER)|GO:0048366(PANTHER)|GO:0055072(PANTHER)
Cre04g1376 495 MobiDBLite consensus disorder prediction 14 41 - -
Cre04g1376 495 MobiDBLite consensus disorder prediction 14 33 - -
Cre04g1376 495 Pfam GRAS domain family 116 494 IPR005202 -
Cre04g1376 495 MobiDBLite consensus disorder prediction 58 94 - -
Cre04g1376 495 ProSiteProfiles GRAS family profile. 104 494 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1577 Cre-Chr2:28305206 Cre04g1376 Cre-Chr4:32593805 6.00E-144 dispersed
Cre04g1365 Cre-Chr4:32480482 Cre04g1376 Cre-Chr4:32593805 7.30E-43 dispersed
Cre04g1376 Cre-Chr4:32593805 Cre06g0871 Cre-Chr6:2015943 3.00E-116 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53474 PF03514 GRAS 3.90E-105 CL0063 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1376 K27743 - csv:101204711 877.856