Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre04g1378 | ATGGAAAATACAAATCTTAATAGGAAGAATGAGGAGCACATGGTGTCAAGTGCTAAACAAATCAAGAAATTCTTGCAAGGCGCATTCACGATCGTTATCGTATTGTTTGAGAAAAAGCAAAGTAGTGGCGATTCCTTGTGCGGATTCCATTTTCAAGTGACAGCTGAGCCTTCCTCACGCACGCTGCCTTTGCTTTCCACATCCTCTTCCTGTCGTATCTCAGCCTTTTTTTCAGTTGCCACTGCCATATCAGAGCAGAATTCCAGGTGGATGCACGGTCATTTTTTACGAAACTACCTCCGCCACCTCCTCCGACCGACCTTTTTCGACGCTCTTTTCAATTTCAGTCTTTTCGAGATGGTCACGTTGCAATCGGCGCGACCGCTGGTTCGCATGTATGAATATCGGCCGTTGATATCCCCATCTTTGGGGAGGTTGAAGCCGGCGAACGTTGCAGTGAACAATGCGATTGGACCGGAGCGGAGTTGTGGAGGTTGGAGGTTCTGTTGCGATGCGGTTACTACTAGTTTCTTACAGCCATTTAAAGCGGCGACGAGCAATTGCTCTGCGATTCACGGTAAAGGTTGCCATGACTATGAGACCTCAAGTGGTGGGAAGTCAACAAATATCGTATGGCATGATTGTCCTATTGGGAAGCCTCAAAGAGAAAAGTTGATTCAGCAGAAAGGCTGTGTCATATGGATAACTGGTCTGAGTGGTTCAGGAAAAAGCACTTTGGCATGTGCATTAAGTCAAGGCTTACATTCAAGAAGAAAACTGACCTACATCCTTGATGGTGACAATATTAGGCATGGTCTAAACAGTGATCTTAGTTTTGAACCCGCAGATCGTGCAGAAAACATACGGAGAATTGGTGAGGTAGCAAGCCTCTTTGCAGATGCTGGGATTATTTGTATTGCTAGTTTAATATCTCCTTTTCGGAAGGATAGAGATGCCTGCCGTGCCTTGCTGGCTGAAGGTGATTTTATTGAGGTTTTCCTTGATGTACCACTTAATATATGTGAAGCCCGAGATCCAAAGGGTCTGTATAAACTGTGTAGAGCAGGAAAGATACAAGGATTCACAGGGATAGATGATCCATATGAAGAACCATTAAATTCCGAGATTGTATTGCAATATAAAGAAGGGATATGCTCGTCCGCTATTGACATGGCAGAAAGAGTGATTTCATATTTAGAAGAGAGAGGATTCGGAAGACGACATGTCGGCAAAAAGTCAGCTTCGGACCTCGTCTGGATTTTGAGTTGGTGTGGAAGGAGGAGGAGCCCTAATTGCAGAGTTCGAAGCTCTAAGGGGCAAAGGAAGATGGGGAAGAAACAGCACAGTAAAGACCGTCTGTTTATTACGAAAACTGAATGGGCCACCGAATGGGGTGGCGCCAAACCCAAGGACTCTCAAACCCCTTTCAAACGCCTTCCTTTCTATTGCTGCGCGCTTACATTTACACCCTTCGAGGACCCTGTTTGTACCGCCGATGGCAGCGTGTTCGAGATTATGAATATCATCCCTTATATTCGAAAGTATGGTAAAAATCCTGTTACTGGAGCTTCCCTGAAGCAGGAGGAACTAATTCCGCTGACATTCCACAAGAATTCTGAAGGCGAGTTCCAATGTCCTGTACTAAACAAAGTTTTTACCGAGTTCACTCACATAGTTGCTATAAAGACCACTGGAAATGTCTTCTGTTACGAGGCAGTTAAAGAATTAAATATCAAGACAAAAAACTGGAAGGAACTTCTCACTGATGAACCATTTAGTAGGGGAGATATTATAACCATTCAGAACCCTAGTGCTCTTGATAGTAAGGTTCTACTGGATTTTGATCATGTGAAAAATAGCCTAAAAGTTGATGATGAAGAACTTCAAAAAATGAAATCGGATCCAACATATAACATAAATGTGTCGGGGGACATCAAGCAGATGCTGCAGGAACTTGGAACCGAAAAGGGAAGGCAAACTGCACTTCATGGTGGAGGTGGTGGCAAGGCACAAAAAGAAAGGGCGGCTGCACTTGCTGCAATTTTAGCTGCTAGGTCACGCATTAAAGAGGATTCCAAGCAGAATGCAAAACGAGAGGATAAACCTACACAGGCATTTAGTATTGTGGATGCTGCATCTGCCTCAGTGCATGGAAGAAGTGCAGCTGCTGCGAAAGCTGCACCAAGTGAAAAAACTGCTGCTCGAATTGCGATGCACATGGCGGGTGAGAGGGCACCAGTAAATGCTAAAATGGTAAAGAGTCGTTACACTACTGGTGCTGCATCCCGGTCCTTCACATCTACATCTTATGACCCTGTTACAAAGAATGAACATGAATATATCAAGGTTGAGAAAAACCCAAAGAAGAAAGGATATGTACAGTTGCATACAACACATGGAGATTTGAATATTGAACTACATTGTGATATTACTCCAAGAACATGCGAGAATTTCATCACACTCTGTGAAAATGGCTACTACAATGGAGTTGCTTTTCATAGAAGTATTAGGAATTTTATGATTCAAGGTGGTGATCCAACTGGTACTGGGAGAGGGGGTGAATCTATATGGGGAAAGCCCTTCAAAGATGAACTTAACTCCAAGCTGCTTCATTCTGGAAGGGGTGTTGTCAGTATGGCAAATAGTGGTCCCCACACTAATGGTTCCCAGTTCTTTATTCTTTACAAATCTGCCAATCACTTAAACTTCAAGCATACCGTATTTGGCGGTGTTGTTGGTGGGTTGACTGCTTTGGCAGCAATGGAAAAGGTTCCTGTTGATGACAATGATCGGCCTCTGGAGGAGATCAAGATAACGAGTGTCACAGTTTTTGTGAATCCATACTCGGAACCTGATGAAGAGGAAGAAAAGCAAAAAGACGAGAAGAATGTGGAGGATGAAGAAAACGATAAGGTTGGATCATGGTATAGTAACCCAGGCACCGGGGTAGCTGAAGATGGAGCTGCTGGTGGCGGTGTAGGGAAGTATTTGAAAGCAAGAAATGCCCAATCCAAACCCCCAGCTGTTGATAGTAGTCTAAAACAAACTACCTCGACCAAGAAAAGAACAGCTGCAGGAGAATTCAAAGACTTCTCTTCTTGGTAA | 3105 | 43.9 | MENTNLNRKNEEHMVSSAKQIKKFLQGAFTIVIVLFEKKQSSGDSLCGFHFQVTAEPSSRTLPLLSTSSSCRISAFFSVATAISEQNSRWMHGHFLRNYLRHLLRPTFFDALFNFSLFEMVTLQSARPLVRMYEYRPLISPSLGRLKPANVAVNNAIGPERSCGGWRFCCDAVTTSFLQPFKAATSNCSAIHGKGCHDYETSSGGKSTNIVWHDCPIGKPQREKLIQQKGCVIWITGLSGSGKSTLACALSQGLHSRRKLTYILDGDNIRHGLNSDLSFEPADRAENIRRIGEVASLFADAGIICIASLISPFRKDRDACRALLAEGDFIEVFLDVPLNICEARDPKGLYKLCRAGKIQGFTGIDDPYEEPLNSEIVLQYKEGICSSAIDMAERVISYLEERGFGRRHVGKKSASDLVWILSWCGRRRSPNCRVRSSKGQRKMGKKQHSKDRLFITKTEWATEWGGAKPKDSQTPFKRLPFYCCALTFTPFEDPVCTADGSVFEIMNIIPYIRKYGKNPVTGASLKQEELIPLTFHKNSEGEFQCPVLNKVFTEFTHIVAIKTTGNVFCYEAVKELNIKTKNWKELLTDEPFSRGDIITIQNPSALDSKVLLDFDHVKNSLKVDDEELQKMKSDPTYNINVSGDIKQMLQELGTEKGRQTALHGGGGGKAQKERAAALAAILAARSRIKEDSKQNAKREDKPTQAFSIVDAASASVHGRSAAAAKAAPSEKTAARIAMHMAGERAPVNAKMVKSRYTTGAASRSFTSTSYDPVTKNEHEYIKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRTCENFITLCENGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTALAAMEKVPVDDNDRPLEEIKITSVTVFVNPYSEPDEEEEKQKDEKNVEDEENDKVGSWYSNPGTGVAEDGAAGGGVGKYLKARNAQSKPPAVDSSLKQTTSTKKRTAAGEFKDFSSW | 1034 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 32602234 | 32611766 | - | CrPI670011_04g013780.1 | Cre04g1378 | 495682 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre04g1378 | 1034 | SUPERFAMILY | Cyclophilin-like | 792 | 958 | IPR029000 | - | |
| Cre04g1378 | 1034 | MobiDBLite | consensus disorder prediction | 1005 | 1022 | - | - | |
| Cre04g1378 | 1034 | Coils | Coil | 950 | 970 | - | - | |
| Cre04g1378 | 1034 | PANTHER | BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE | 203 | 404 | - | GO:0000103(PANTHER)|GO:0004020(PANTHER) | |
| Cre04g1378 | 1034 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 482 | 538 | IPR013083 | - | |
| Cre04g1378 | 1034 | CDD | APSK | 232 | 378 | IPR002891 | GO:0000103(InterPro)|GO:0004020(InterPro)|GO:0005524(InterPro) | |
| Cre04g1378 | 1034 | FunFam | Peptidyl-prolyl cis-trans isomerase cyp65 | 773 | 957 | - | - | |
| Cre04g1378 | 1034 | CDD | RING-Ubox_PPIL2 | 480 | 552 | IPR026951 | - | |
| Cre04g1378 | 1034 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 796 | 943 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Cre04g1378 | 1034 | ProSiteProfiles | U-box domain profile. | 477 | 550 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Cre04g1378 | 1034 | SUPERFAMILY | RING/U-box | 479 | 546 | - | - | |
| Cre04g1378 | 1034 | CDD | cyclophilin_RING | 792 | 950 | - | - | |
| Cre04g1378 | 1034 | ProSitePatterns | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 827 | 844 | IPR020892 | GO:0003755(InterPro)|GO:0006457(InterPro) | |
| Cre04g1378 | 1034 | MobiDBLite | consensus disorder prediction | 946 | 1034 | - | - | |
| Cre04g1378 | 1034 | MobiDBLite | consensus disorder prediction | 950 | 972 | - | - | |
| Cre04g1378 | 1034 | Gene3D | - | 772 | 957 | IPR029000 | - | |
| Cre04g1378 | 1034 | SMART | Ubox_2 | 481 | 543 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Cre04g1378 | 1034 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 228 | 402 | IPR027417 | - | |
| Cre04g1378 | 1034 | NCBIfam | adenylyl-sulfate kinase | 212 | 381 | IPR002891 | GO:0000103(InterPro)|GO:0004020(InterPro)|GO:0005524(InterPro) | |
| Cre04g1378 | 1034 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 792 | 943 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Cre04g1378 | 1034 | Pfam | Adenylylsulphate kinase | 229 | 378 | - | - | |
| Cre04g1378 | 1034 | Gene3D | - | 200 | 404 | IPR027417 | - | |
| Cre04g1378 | 1034 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 903 | 918 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Cre04g1378 | 1034 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 806 | 821 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Cre04g1378 | 1034 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 832 | 844 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Cre04g1378 | 1034 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 875 | 890 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Cre04g1378 | 1034 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 890 | 902 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Cre04g1378 | 1034 | Hamap | Adenylyl-sulfate kinase [cysC]. | 228 | 403 | IPR002891 | GO:0000103(InterPro)|GO:0004020(InterPro)|GO:0005524(InterPro) | |
| Cre04g1378 | 1034 | FunFam | Peptidyl-prolyl cis-trans isomerase 2 | 483 | 538 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre04g1378 | Cre-Chr4:32602234 | Cre10g1488 | Cre-Chr10:28735591 | 4.20E-83 | dispersed | |
| Cre01g1143 | Cre-Chr1:22446514 | Cre04g1378 | Cre-Chr4:32602234 | 5.30E-41 | transposed | |
| Cre05g0294 | Cre-Chr5:2712998 | Cre04g1378 | Cre-Chr4:32602234 | 1.30E-41 | transposed | |
| Cre05g1969 | Cre-Chr5:31812645 | Cre04g1378 | Cre-Chr4:32602234 | 3.00E-37 | transposed | |
| Cre10g1992 | Cre-Chr10:34607109 | Cre04g1378 | Cre-Chr4:32602234 | 4.30E-43 | transposed | |
| Cre10g1178 | Cre-Chr10:24222520 | Cre04g1378 | Cre-Chr4:32602234 | 4.50E-83 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre04g1378 | K10598 | - | csv:101204462 | 1065.83 |