Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1401 ATGAATAATGTTAATGGCAACAACTGTAACTGGCTAGGTTTCTCTGTCTCCCCTAACGTTAACATGGAGCTTTCTTCTTCCTCTGCTACTACTGTCTCCCCTTCAATTCCTGCAAATCTTTTTCACTCCCCATCTCAGTTTAACTATGGCATTTGCTATGGTGTTGATGCAGAACATGGTGGATTTTATTCACCATTATCTTCCATGCCACTCAAGTCAGATGGCTCCATTTGTTCAATGGAAGCTCTCAGCAGGCAGCATCCACAAGTGGTGAGTAGCTCTACTCCAAAACTAGAGGATTTCTTTGGTGGTGCAACTATGGGGTCCCATCACTATGAAAGCAATGACAGGGAAGCTATGGCTCTCAGCCTAGACAGCATATTTTGCCATCAAAACCCAACTCATGAGCCCAACAACCAAACCTTTGCACATTTCTCATCCTTAAGGAGCCGTGAACTGATGCTTCAAGACTCGAAGGTAATCCTGCCTGATGGGTGCAATCTGCAGCAGCAGCAGCAGCAACACCATCCAGCAGTAGCCCAGAGTGATATTTCTGGTATGAAGAATTGGGCTGTTCCTAGAAACTATGCTGCCACTAACAATGGTTCGTTCGAGCAGAAGATGGTGAATTGCATGAGTGAAAATAGTGGTGAATCTGGTCCCATTAATGCCATGGCTTATGGAGATTTACAGTCATTGAGCTTGTCCATGACTATGAGCCCCAGCTCTCAGTCAAGCTGTGTCACAACCACACAGCATGTCTCACCTGCCATGGCTGACTGTTCTGCCATGGATACAAAGAAAAGAGGCCATGAGAAGGTTGATCAGAAGCAAATTGTTCATAGGAAGTCTTTAGATACCTTTGGACAGAGAACCTCACAGTATAGAGGGGTTACGAGGCACAGATGGACGGGTAGGTATGAAGCACATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGGCAAGGAGGTTATGATATGGAAGAAAAAGCCGCTAGAGCTTATGATCTTGCTGCACTCAAGTATTGGGGACCCTCCACCCACATTAACTTTCCTTTGGAAAACTATCAGAAAGAATTAGAGGAAATGAAAAACATGAGCAGGCAGGAATATGTCGCTCACCTGAGAAGAAGAAGCAGCGGGTTCTCAAGAGGGGCCTCGATATACAGAGGTGTAACAAGGCATCATCAACATGGAAGATGGCAGGCTCGGATTGGCCGAGTTGCTGGTAACAAAGATCTGTATCTTGGGACATTCAGTACTCAAGAGGAAGCTGCCGAGGCTTATGACATAGCAGCCATAAAATTTCGAGGAATGAATGCCGTTACTAATTTCGATATCACGAGGTATGACGTGGAGCGGATTATTGCAAGCAATACCCTCCTTAGTGGCGATCTAGCTAAGAGAAAGCAGCAGCCAGAGTTTGATAATGAATCACTTAGACGAAACCCTACTCACAACAGCAATTCAGAAGCTATGCCTCTGCCCTCACAGAATAGCGGTCAAAGTGAATCAGACTGGAAAATGGCTCTTTATCAGTCATCACAGCAGCTCGTTCCGAAGCAACGAATGTTGTCTGCAATAAATGATGATGGATCACAAATTGGAGTCGAAGATTCGGCCAGAATGGGAGCTCATTTCTCCAACGCATCTTCAATGGTGACTAGCTGCAGCTTGAGCAGCTCAAGGGAGGAGAGTCCAGACAAGACAAGCCTTTCGATGGTGTTTGGAATGCCTCAATCGACATCTAAGCCGTTTGCTGCCTCGGCTAGTAATATGAACACCTCCTGGATTGCATCTGCCCAACAGTTAAGGGCAGCAAATTGTATGAGCCAGTTGCCAGTTTTTGCTGCCTGGACCGATACTTAA 1884 45.75 MNNVNGNNCNWLGFSVSPNVNMELSSSSATTVSPSIPANLFHSPSQFNYGICYGVDAEHGGFYSPLSSMPLKSDGSICSMEALSRQHPQVVSSSTPKLEDFFGGATMGSHHYESNDREAMALSLDSIFCHQNPTHEPNNQTFAHFSSLRSRELMLQDSKVILPDGCNLQQQQQQHHPAVAQSDISGMKNWAVPRNYAATNNGSFEQKMVNCMSENSGESGPINAMAYGDLQSLSLSMTMSPSSQSSCVTTTQHVSPAMADCSAMDTKKRGHEKVDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMSRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFDITRYDVERIIASNTLLSGDLAKRKQQPEFDNESLRRNPTHNSNSEAMPLPSQNSGQSESDWKMALYQSSQQLVPKQRMLSAINDDGSQIGVEDSARMGAHFSNASSMVTSCSLSSSREESPDKTSLSMVFGMPQSTSKPFAASASNMNTSWIASAQQLRAANCMSQLPVFAAWTDT 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32806208 32809345 + CrPI670011_04g014010.1 Cre04g1401 495705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1401 627 CDD AP2 392 453 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1401 627 PRINTS Ethylene responsive element binding protein signature 295 306 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1401 627 PRINTS Ethylene responsive element binding protein signature 433 453 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1401 627 SUPERFAMILY DNA-binding domain 392 452 IPR016177 GO:0003677(InterPro)
Cre04g1401 627 SUPERFAMILY DNA-binding domain 293 359 IPR016177 GO:0003677(InterPro)
Cre04g1401 627 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 219 519 - -
Cre04g1401 627 FunFam AP2-like ethylene-responsive transcription factor ANT 293 359 - -
Cre04g1401 627 Gene3D AP2/ERF domain 293 359 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1401 627 Gene3D AP2/ERF domain 393 453 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1401 627 ProSiteProfiles AP2/ERF domain profile. 294 357 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1401 627 Coils Coil 358 378 - -
Cre04g1401 627 MobiDBLite consensus disorder prediction 487 510 - -
Cre04g1401 627 MobiDBLite consensus disorder prediction 472 510 - -
Cre04g1401 627 ProSiteProfiles AP2/ERF domain profile. 393 451 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1401 627 FunFam AP2-like ethylene-responsive transcription factor 392 453 - -
Cre04g1401 627 CDD AP2 293 357 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1401 627 Pfam AP2 domain 394 444 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1401 627 Pfam AP2 domain 294 349 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1401 627 SMART rav1_2 294 363 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1401 627 SMART rav1_2 393 457 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1401 Cre-Chr4:32806208 Cre05g2819 Cre-Chr5:38892665 6.40E-127 dispersed
Cre02g2634 Cre-Chr2:39612798 Cre04g1401 Cre-Chr4:32806208 9.90E-93 transposed
Cre10g0931 Cre-Chr10:12004700 Cre04g1401 Cre-Chr4:32806208 1.40E-87 transposed
Cre04g1401 Cre-Chr4:32806208 Cre08g1616 Cre-Chr8:28644650 8.20E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53479 PF00847 AP2 4.10E-10 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1401 K09285 - csv:101203323 1148.65