Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g1411 | ATGGGTTTTGATGATCTTTCTAATACAGGCCTTCTACTGGGTTTGGGATTAAATCTTCCCTCTAATCCTCCCCATCTTTCTCAAAAACCCAAGAAGCCCCTGGATTTGCTCTGTTTTCCCGCCCCTGAATCCGAGCCTTCCTTAACTTTGGGGCTTTCCACCGTCGACACTTACCCATCTGAAACCGCGGATTTGTCACGGCAACCATCTCCTCACAGTGCGATTTCTTCTTTCTCTGGCGGTAAGGTCAAGCGTGAAAGAGATGTTTCCGGTGGTGAAGATATTGAAGAAGAGAAAGCTTCTTCTCGAGTTAGCGACGAAGAAGAAGATGGTTCTAATGCTAGAAAAAAACTTAGGCTAACTAAAGAACAATCTGCCCTTTTGGAAGAGAGCTTCAAACTTCACAGTACTCTCAACCCTAAGCAAAAGCAAGCCTTAGCTAGAGAGTTAAATCTCCTGCCTCGACAAGTTGAAGTTTGGTTCCAGAATAGGAGAGCCAGGACAAAGCTAAAGCAAACAGAAGTAGATTGCGAGTTTCTAAAGAGATGCTGCGAAACGCTAACGGACGAAAACAGGAGGCTGCAGAAAGAGCTGCAAGAATTGAAAGCCCTGAAACTAGCGCAGCCTCTGTTCATGCAAATGCCGGCGGCGACACTCACTATGTGCCCGTCTTGCGAGCGGATCGGCGGTGGTGCCGCCACCGTTAACGGCGACGGCAATTCCAAGGGCCCATTTTCGATGGCCCCCAATCCCCGGTTTTACAAAGCCTTCACCAAGCCCTCCGCTGCTTGCTAA | 795 | 48.55 | MGFDDLSNTGLLLGLGLNLPSNPPHLSQKPKKPLDLLCFPAPESEPSLTLGLSTVDTYPSETADLSRQPSPHSAISSFSGGKVKRERDVSGGEDIEEEKASSRVSDEEEDGSNARKKLRLTKEQSALLEESFKLHSTLNPKQKQALARELNLLPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRRLQKELQELKALKLAQPLFMQMPAATLTMCPSCERIGGGAATVNGDGNSKGPFSMAPNPRFYKAFTKPSAAC | 264 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 32939901 | 32940894 | + | CrPI670011_04g014110.1 | Cre04g1411 | 495715 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g1411 | 264 | SMART | halz | 171 | 214 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre04g1411 | 264 | MobiDBLite | consensus disorder prediction | 81 | 118 | - | - | |
Cre04g1411 | 264 | FunFam | Homeobox-leucine zipper protein 18 | 100 | 176 | - | - | |
Cre04g1411 | 264 | MobiDBLite | consensus disorder prediction | 12 | 118 | - | - | |
Cre04g1411 | 264 | ProSiteProfiles | 'Homeobox' domain profile. | 111 | 171 | IPR001356 | GO:0003677(InterPro) | |
Cre04g1411 | 264 | SUPERFAMILY | Homeodomain-like | 106 | 172 | IPR009057 | - | |
Cre04g1411 | 264 | Pfam | Homeobox associated leucine zipper | 171 | 205 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre04g1411 | 264 | CDD | homeodomain | 115 | 172 | IPR001356 | GO:0003677(InterPro) | |
Cre04g1411 | 264 | MobiDBLite | consensus disorder prediction | 47 | 77 | - | - | |
Cre04g1411 | 264 | Coils | Coil | 177 | 207 | - | - | |
Cre04g1411 | 264 | Gene3D | - | 107 | 176 | - | - | |
Cre04g1411 | 264 | SMART | HOX_1 | 113 | 175 | IPR001356 | GO:0003677(InterPro) | |
Cre04g1411 | 264 | Pfam | Homeodomain | 115 | 169 | IPR001356 | GO:0003677(InterPro) | |
Cre04g1411 | 264 | ProSitePatterns | 'Homeobox' domain signature. | 146 | 169 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cre04g1411 | 264 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 10 | 239 | IPR050762 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g1411 | Cre-Chr4:32939901 | Cre10g0999 | Cre-Chr10:17069352 | 4.80E-76 | dispersed | |
Cre04g1411 | Cre-Chr4:32939901 | Cre09g0360 | Cre-Chr9:3557224 | 1.10E-53 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53481 | PF00046 | Homeodomain | 1.00E-15 | CL0123 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g1411 | K09338 | - | csv:101218782 | 462.225 |