Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1420 ATGTGGTTTCTTCTTGTTTTTGTGCTTCTTCAACTTCACTTTTCCCCTTCCTTCTCTGCCTTCCTACCCGAATCCCAAGCCCTTCTCTCTCTCAAATCCTCCATTTCTGACGACCCTCGTTCTTCTCTCTCCTCCTGGAACGCCGTCGCCGCCCACTGTACCTGGTTCGGCGTCACATGCGACGCCCGCCGCCTCGTCGTTGCCCTCCACCTCTCTTCCCTTGACCTCGCCGGCACCATTTCCCCTGACCTTGCGTCTCTTCGCTTTCTCACTAATGTTTCCTTCGGCCTCAACAAATTTTCCGGCGGAATCCCACCGGAGATTGCCTCCATTTCTTCTCTCCAGTATCTTAATCTTTCTAGTAACGTCCTCAATGGGTCGATTCCTCGCGAGTTTTCGCAGCTCAAAAACTTACAGGTTCTTGATGTTTATAACAATAACCTGACCGGTGATTTTCCCAGAGTGGTCACTGAAATGACCAACCTCCGCCATTTGCACCTTGGGGGAAATTTCTTCACCGGTCGGATTCCTCCGGAGGTCGGACGGTTGCAGTTCTTGGAGTTTTTGGCGATTCACGGCAATGACCTTGAAGGTCCAATACCGCCGGCGATCGGAAACTTGACGAAGCTTCGGGAACTTTACATTGGTTACTACAACATCTTCGTCGGTGGAATACCGGCGACGATAGGGAATTTGTCGGAGTTAGTTCGGTTGGATGCCGCGAGCTGTGGGTTGACCGGAAAGTTTCCGCCGGAGCTGGGAAAGTTGCAGAAACTCACTGAACTGTACCTTCAACAAAATGCTCTGTCTGGACCTTTGCTGGAGCTAGGAGGATTGAAGAGCATAGAAGAGTTGGATATATCATGCAATATGCTTGTTGGTGAAATACCCATCTCTTTCGCAGAGTTCAAGAACTTGAGGCTGTTGCAACTTTTCGACAACAAGCTCTCCGGAGAGATTCCGGGATTCATGGGCGACCTCCCAAAGCTGGAGATATTGCAATTATGGAACAACAATTTCACAGGTTCGATCCCTCGAAATTTGGGGAAGAACGGAATGCTTCGGACTCTCGACCTTGCTTTCAACCACTTGACAGGTACGATTCCTCCTGAAATCTGCCATGGGAATAAGCTTGAAGTTTTGATCGCCATGGGCAATTCCTTGTCTGGTTCCATCCCAGAATCATTGGGGAATTGTATTTCACTTAAGCGTATACTTCTGTGGGGAAACGCTCTTAATGGATCAATTCCAAAGAGGCTTTTGAGTTTGCCAAATCTCACTCAAGTTGATTTGCAAGACAATTTTCTCTCCGGAGAATTTCCCATTACCAATTCAGTCTCGGTTAACCTCCTTCAGATAAGTTTATCTAATAATATGCTCTCTGGATCCTTGCCACCCACCATCGGCAGCCTTGTGGCCGTCCAGAAGCTTCTTCTTGACCGGAATAAGTTTTCTGGTCAGATTCCTTCAAATATTGGGAGATTACAGCAACTATCTCGGATAAATTTCAGCCAGAATAAGTTCTCTGGTACAATTGTGCCAGAGATAAGTGAGTGTAAGCACTTAATATTTCTTGATCTTAGTGGAAATGAGCTTTCTGGTGAAATCCCCGACCATATTACCGACATGAAGTTATTGAATTATATGAATCTCTCAAGAAACCATTTAGTTGGGCCCATTCCTGCTTCAATAGTTAACATGCAGAGCTTAACCTCTGTGGACTTTTCATATAACAATCTCTCTGGTTTGGTTCTGGGAACTGGACAATTTGGTTACTTCAATTACACATCATTTTTAGGCAATCCTTATCTCTGTGGTGCATATTTGGGGCCTTGCAAAGAAGGGGTTCTTGCTAGCAATCACCAAGAACATATGAAAGGCTCTCTCTCAACTCCTCTCAGGCTCCTGCTAGTTTTTGGTTTTTTTTTTGGTTTAGTTGCACTGACAGTTGCATTGATCTTCAAAGTTCGGTGGTTTAAGAGAGCAAGGGAGTCTAGAGGATGGAGATTAACAGCCTTCCAACGGCTGGGTTTCTCGGTTGATGAGATCTTGGATTGCCTTAAGAAGGAAAATCTTATTGCAAAAGGAGGTTATGGCACAGTATATACAGGAGTGATGCCAAGTGGTGATCAGATCACTCTGAAAAGGCTTCCAAAGATGAGCAATGGGTGTTCTCGTGACCACGGATTCAATGCCGAGATTCAAGCTCTTGGGAGGATTCGACACCGTCACATTGTTAGATTATTGGGCCTCTGTTCAAACCATGAAACTAATCTTTTGGTATTTGAGTACATGCCTAATGGGAGTCTCTATGAGGTTCTCCATGGCAAGAAAGGAGGTCACTTGCTTTGGGATACAAGGTACAAGATAGCCATTGGAACTGCGAATGGACTCTGCTATCTTCACCACCATTGCTCGCCGCCCATTGTTCATCGAAATGTGAAATCAAACAACATTATGCTAGACACCAACTTTGAAGCTCAGATTGCCAATTCCGGGCTTGCAAAGTTCTTAGAAGATTCAAGGACATCGGATAAGTCAGCTACTGAGCCAGAGCATGCCGACACACAGAATGCCGATGAGAAGTGGGATGTATATAGCTTCGGTGTCATCCTATTGGAACTCGTTAGCGGTAGGAATCCAGTCGGAGAACTAAGCGACAGTGTCGACATAGTTCAATGGGTTAGAAACATGTCAGTTTCAGAAAAGGAAGAAATACATAAAATCGTCGATCAAAGACTCTCCTCCGTCCCCCTTGACGAAGCGATGCACGTGCTCAATGTTGCCATGCTGTGCACTGAAGAAGAGGCTGCAAAGCGTCCCACAATGCGGGAAGTCGTCCGGATCTTAACCGAGCATCAGCAACAATCATTCTCGAAGGAGAATAGAGATACATAA 2898 45.82 MWFLLVFVLLQLHFSPSFSAFLPESQALLSLKSSISDDPRSSLSSWNAVAAHCTWFGVTCDARRLVVALHLSSLDLAGTISPDLASLRFLTNVSFGLNKFSGGIPPEIASISSLQYLNLSSNVLNGSIPREFSQLKNLQVLDVYNNNLTGDFPRVVTEMTNLRHLHLGGNFFTGRIPPEVGRLQFLEFLAIHGNDLEGPIPPAIGNLTKLRELYIGYYNIFVGGIPATIGNLSELVRLDAASCGLTGKFPPELGKLQKLTELYLQQNALSGPLLELGGLKSIEELDISCNMLVGEIPISFAEFKNLRLLQLFDNKLSGEIPGFMGDLPKLEILQLWNNNFTGSIPRNLGKNGMLRTLDLAFNHLTGTIPPEICHGNKLEVLIAMGNSLSGSIPESLGNCISLKRILLWGNALNGSIPKRLLSLPNLTQVDLQDNFLSGEFPITNSVSVNLLQISLSNNMLSGSLPPTIGSLVAVQKLLLDRNKFSGQIPSNIGRLQQLSRINFSQNKFSGTIVPEISECKHLIFLDLSGNELSGEIPDHITDMKLLNYMNLSRNHLVGPIPASIVNMQSLTSVDFSYNNLSGLVLGTGQFGYFNYTSFLGNPYLCGAYLGPCKEGVLASNHQEHMKGSLSTPLRLLLVFGFFFGLVALTVALIFKVRWFKRARESRGWRLTAFQRLGFSVDEILDCLKKENLIAKGGYGTVYTGVMPSGDQITLKRLPKMSNGCSRDHGFNAEIQALGRIRHRHIVRLLGLCSNHETNLLVFEYMPNGSLYEVLHGKKGGHLLWDTRYKIAIGTANGLCYLHHHCSPPIVHRNVKSNNIMLDTNFEAQIANSGLAKFLEDSRTSDKSATEPEHADTQNADEKWDVYSFGVILLELVSGRNPVGELSDSVDIVQWVRNMSVSEKEEIHKIVDQRLSSVPLDEAMHVLNVAMLCTEEEAAKRPTMREVVRILTEHQQQSFSKENRDT 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32992807 32995929 - CrPI670011_04g014200.1 Cre04g1420 495724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1420 965 Gene3D Phosphorylase Kinase; domain 1 659 764 - -
Cre04g1420 965 SMART LRR_sd22_2 207 234 - -
Cre04g1420 965 SMART LRR_sd22_2 135 164 - -
Cre04g1420 965 SMART LRR_sd22_2 256 287 - -
Cre04g1420 965 Gene3D Ribonuclease Inhibitor 326 617 IPR032675 -
Cre04g1420 965 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 331 616 - -
Cre04g1420 965 SMART serkin_6 687 949 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1420 965 Pfam Leucine rich repeat N-terminal domain 24 61 IPR013210 -
Cre04g1420 965 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 765 958 - -
Cre04g1420 965 Pfam Protein tyrosine and serine/threonine kinase 688 950 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1420 965 SMART LRR_typ_2 111 135 IPR003591 -
Cre04g1420 965 SMART LRR_typ_2 471 495 IPR003591 -
Cre04g1420 965 SMART LRR_typ_2 352 375 IPR003591 -
Cre04g1420 965 SMART LRR_typ_2 256 279 IPR003591 -
Cre04g1420 965 SMART LRR_typ_2 327 351 IPR003591 -
Cre04g1420 965 SMART LRR_typ_2 567 590 IPR003591 -
Cre04g1420 965 SMART LRR_typ_2 159 183 IPR003591 -
Cre04g1420 965 Gene3D Transferase(Phosphotransferase) domain 1 765 965 - -
Cre04g1420 965 Pfam Leucine rich repeat 113 170 IPR001611 GO:0005515(InterPro)
Cre04g1420 965 SUPERFAMILY L domain-like 353 611 - -
Cre04g1420 965 Pfam Leucine Rich Repeat 354 374 IPR001611 GO:0005515(InterPro)
Cre04g1420 965 Pfam Leucine Rich Repeat 521 542 IPR001611 GO:0005515(InterPro)
Cre04g1420 965 Pfam Leucine Rich Repeat 281 301 IPR001611 GO:0005515(InterPro)
Cre04g1420 965 Pfam Leucine Rich Repeat 449 471 IPR001611 GO:0005515(InterPro)
Cre04g1420 965 Pfam Leucine Rich Repeat 329 350 IPR001611 GO:0005515(InterPro)
Cre04g1420 965 Pfam Leucine Rich Repeat 377 399 IPR001611 GO:0005515(InterPro)
Cre04g1420 965 ProSiteProfiles Protein kinase domain profile. 687 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1420 965 SUPERFAMILY Protein kinase-like (PK-like) 681 950 IPR011009 -
Cre04g1420 965 Gene3D Ribonuclease Inhibitor 177 322 IPR032675 -
Cre04g1420 965 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 656 764 - -
Cre04g1420 965 Gene3D Ribonuclease Inhibitor 23 176 IPR032675 -
Cre04g1420 965 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 953 IPR050647 -
Cre04g1420 965 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 22 177 - -
Cre04g1420 965 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 178 273 - -
Cre04g1420 965 SUPERFAMILY RNI-like 69 413 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1420 Cre-Chr4:32992807 Cre10g0980 Cre-Chr10:14300229 1.50E-21 dispersed
Cre04g1420 Cre-Chr4:32992807 Cre04g1421 Cre-Chr4:33009925 3.80E-22 tandem
Cre04g2203 Cre-Chr4:39133367 Cre04g1420 Cre-Chr4:32992807 1.30E-107 transposed
Cre05g1985 Cre-Chr5:31939174 Cre04g1420 Cre-Chr4:32992807 4.20E-96 transposed
Cre10g0888 Cre-Chr10:10211140 Cre04g1420 Cre-Chr4:32992807 8.30E-97 transposed
Cre11g1910 Cre-Chr11:30867215 Cre04g1420 Cre-Chr4:32992807 2.10E-60 wgd
Cre04g1420 Cre-Chr4:32992807 Cre08g1139 Cre-Chr8:24599080 4.50E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64063 PF07714 PK_Tyr_Ser-Thr 3.60E-37 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1420 - - - 0.0